Variant report
| Variant | rs73015864 |
|---|---|
| Chromosome Location | chr3:159913814-159913815 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr3:159907390..159910226-chr3:159913319..159915599,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:17)
| rs_ID | r2[population] |
|---|---|
| rs11920700 | 1.00[EUR][1000 genomes] |
| rs16831015 | 1.00[EUR][1000 genomes] |
| rs55968097 | 1.00[EUR][1000 genomes] |
| rs56215302 | 1.00[EUR][1000 genomes] |
| rs56315946 | 1.00[EUR][1000 genomes] |
| rs6441302 | 1.00[EUR][1000 genomes] |
| rs6768668 | 1.00[EUR][1000 genomes] |
| rs6781270 | 1.00[EUR][1000 genomes] |
| rs6793055 | 1.00[EUR][1000 genomes] |
| rs73015861 | 1.00[EUR][1000 genomes] |
| rs73015862 | 1.00[EUR][1000 genomes] |
| rs73015868 | 1.00[EUR][1000 genomes] |
| rs73015871 | 1.00[EUR][1000 genomes] |
| rs73015873 | 1.00[EUR][1000 genomes] |
| rs73015874 | 1.00[EUR][1000 genomes] |
| rs73875234 | 1.00[EUR][1000 genomes] |
| rs73875239 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv532666 | chr3:159777847-160703202 | Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 271 gene(s) | inside rSNPs | diseases |
| 2 | nsv877699 | chr3:159820488-159976271 | Weak transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 11 gene(s) | inside rSNPs | diseases |
| 3 | nsv1000453 | chr3:159853305-160366357 | Active TSS Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 259 gene(s) | inside rSNPs | diseases |
| 4 | nsv536779 | chr3:159853305-160366357 | Strong transcription Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 259 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:159913000-159914000 | Weak transcription | Mesenchymal Stem Cell Derived Adipocyte Cultured Cells | ES cell derived |
