Variant report

Variant	rs73016156
Chromosome Location	chr1:150042122-150042123
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:14)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:14 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:150035483..150047454-chr1:150129931..150138567,28	MCF-7	breast:
2	chr1:150040974..150043925-chr1:150093337..150095399,2	MCF-7	breast:
3	chr1:149899695..149901741-chr1:150039776..150042138,2	K562	blood:
4	chr1:150040162..150042986-chr1:150044967..150046584,2	K562	blood:
5	chr1:149986387..149989368-chr1:150040476..150042209,2	MCF-7	breast:
6	chr1:149907171..149915966-chr1:150036158..150043011,15	MCF-7	breast:
7	chr1:149912197..149914879-chr1:150040016..150042189,2	MCF-7	breast:
8	chr1:149855827..149861924-chr1:150032527..150042362,32	MCF-7	breast:
9	chr1:149854948..149862391-chr1:150036900..150043965,32	MCF-7	breast:
10	chr1:149855739..149860992-chr1:150036779..150042618,12	K562	blood:
11	chr1:150040336..150043313-chr1:150134934..150137492,3	K562	blood:
12	chr1:150040895..150044232-chr1:150137014..150139861,3	K562	blood:
13	chr1:149996036..149997673-chr1:150041872..150044139,2	MCF-7	breast:
14	chr1:150040455..150043780-chr1:150205573..150208481,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000184270	Chromatin interaction
ENSG00000143401	Chromatin interaction
ENSG00000143368	Chromatin interaction
ENSG00000184678	Chromatin interaction
ENSG00000014914	Chromatin interaction
ENSG00000023902	Chromatin interaction
ENSG00000184260	Chromatin interaction
ENSG00000178096	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs61657547	0.94[AFR][1000 genomes]
rs73011255	1.00[AFR][1000 genomes]
rs73011269	1.00[AFR][1000 genomes]
rs73011280	0.83[AFR][1000 genomes]
rs73011283	0.83[AFR][1000 genomes]
rs73011288	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831537	chr1:149833357-150064655	Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	431 gene(s)	inside rSNPs	diseases
2	nsv529719	chr1:150006344-150311095	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	100 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:150040000-150050200	Weak transcription	Spleen	Spleen
2	chr1:150040200-150046000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr1:150040200-150090800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr1:150040400-150044000	Weak transcription	Primary B cells from peripheral blood	blood
5	chr1:150040400-150044000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
6	chr1:150040400-150046000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr1:150040400-150046200	Weak transcription	Fetal Thymus	thymus
8	chr1:150040400-150047800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr1:150040400-150047800	Weak transcription	Primary T cells fromperipheralblood	blood
10	chr1:150040400-150047800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
11	chr1:150040400-150049800	Weak transcription	Ovary	ovary
12	chr1:150040400-150049800	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr1:150040400-150050000	Weak transcription	Lung	lung
14	chr1:150040400-150056400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr1:150040400-150061600	Weak transcription	Primary neutrophils fromperipheralblood	blood
16	chr1:150040400-150078800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr1:150040400-150082800	Weak transcription	Small Intestine	intestine
18	chr1:150040400-150086800	Weak transcription	Esophagus	oesophagus
19	chr1:150040400-150121400	Weak transcription	Pancreas	Pancrea
20	chr1:150040600-150042400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
21	chr1:150040600-150046200	Weak transcription	Colonic Mucosa	Colon
22	chr1:150040600-150048200	Weak transcription	H1 Cell Line	embryonic stem cell
23	chr1:150040600-150072200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
24	chr1:150040600-150092000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
25	chr1:150040800-150042400	Enhancers	Primary T helper cells PMA-I stimulated	--
26	chr1:150040800-150042400	Genic enhancers	Colon Smooth Muscle	Colon
27	chr1:150040800-150045600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
28	chr1:150040800-150046000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr1:150040800-150048400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
30	chr1:150040800-150048800	Weak transcription	Primary B cells from cord blood	blood
31	chr1:150040800-150049000	Weak transcription	Primary T cells from cord blood	blood
32	chr1:150040800-150049800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
33	chr1:150040800-150049800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr1:150040800-150049800	Weak transcription	Placenta Amnion	Placenta Amnion
35	chr1:150040800-150054400	Weak transcription	Aorta	Aorta
36	chr1:150041000-150042200	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
37	chr1:150041000-150042200	Enhancers	Fetal Heart	heart
38	chr1:150041000-150042200	Genic enhancers	Fetal Muscle Leg	muscle
39	chr1:150041000-150042400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr1:150041000-150044400	Weak transcription	Fetal Stomach	stomach
41	chr1:150041000-150047400	Strong transcription	Placenta	Placenta
42	chr1:150041000-150047600	Weak transcription	Rectal Mucosa Donor 29	rectum
43	chr1:150041000-150048200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
44	chr1:150041000-150048200	Weak transcription	Fetal Brain Female	brain
45	chr1:150041000-150048800	Weak transcription	Brain Inferior Temporal Lobe	brain
46	chr1:150041000-150049200	Weak transcription	Primary hematopoietic stem cells	blood
47	chr1:150041000-150049800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
48	chr1:150041000-150049800	Weak transcription	Thymus	Thymus
49	chr1:150041000-150049800	Weak transcription	HSMMtube	muscle
50	chr1:150041000-150053600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood

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