Variant report

Variant	rs7301638
Chromosome Location	chr12:60071670-60071671
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12296723	1.00[AMR][1000 genomes]
rs12299629	1.00[AMR][1000 genomes]
rs12307550	1.00[AMR][1000 genomes]
rs17122770	1.00[AMR][1000 genomes]
rs58475293	1.00[AMR][1000 genomes]
rs7971766	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869425	chr12:59746898-60479741	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv899131	chr12:59942122-60124089	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	esv3365928	chr12:60042531-60343212	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:60026600-60089200	Weak transcription	Gastric	stomach
2	chr12:60045600-60071800	Weak transcription	Ovary	ovary
3	chr12:60045800-60085400	Weak transcription	NHDF-Ad	bronchial
4	chr12:60045800-60099800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr12:60050800-60098600	Weak transcription	Primary T cells fromperipheralblood	blood
6	chr12:60058800-60080200	Weak transcription	Fetal Heart	heart
7	chr12:60059800-60071800	Weak transcription	Psoas Muscle	Psoas
8	chr12:60061600-60074800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
9	chr12:60062200-60071800	Weak transcription	Aorta	Aorta
10	chr12:60062200-60085800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr12:60069600-60071800	Weak transcription	Right Atrium	heart
12	chr12:60069600-60131400	Weak transcription	Primary T helper cells fromperipheralblood	blood
13	chr12:60069800-60078200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
14	chr12:60071000-60072400	ZNF genes & repeats	Primary T cells from cord blood	blood
15	chr12:60071000-60072600	ZNF genes & repeats	Primary hematopoietic stem cells	blood
16	chr12:60071000-60073000	ZNF genes & repeats	Dnd41	blood
17	chr12:60071200-60071800	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
18	chr12:60071200-60072800	ZNF genes & repeats	Primary B cells from peripheral blood	blood
19	chr12:60071200-60072800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr12:60071200-60073000	ZNF genes & repeats	Primary B cells from cord blood	blood
21	chr12:60071400-60072000	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
22	chr12:60071400-60072400	Genic enhancers	Adipose Nuclei	Adipose
23	chr12:60071400-60072600	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
24	chr12:60071400-60073800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr12:60071600-60071800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
26	chr12:60071600-60071800	Enhancers	Right Ventricle	heart
27	chr12:60071600-60072000	Genic enhancers	Esophagus	oesophagus
28	chr12:60071600-60072200	Genic enhancers	Primary T helper naive cells from peripheral blood	blood
29	chr12:60071600-60072200	ZNF genes & repeats	Spleen	Spleen
30	chr12:60071600-60072400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr12:60071600-60072600	ZNF genes & repeats	Primary Natural Killer cells fromperipheralblood	blood
32	chr12:60071600-60072600	ZNF genes & repeats	Thymus	Thymus
33	chr12:60071600-60072800	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
34	chr12:60071600-60073000	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr12:60071600-60073000	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr12:60071600-60073000	ZNF genes & repeats	Fetal Stomach	stomach
37	chr12:60071600-60073000	Genic enhancers	Pancreas	Pancrea
38	chr12:60071600-60073200	Enhancers	Left Ventricle	heart
39	chr12:60071600-60098600	Weak transcription	Primary T helper cells PMA-I stimulated	--

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