Variant report

Variant	rs73016879
Chromosome Location	chr6:164817756-164817757
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:164754441..164757188-chr6:164816379..164818209,2	K562	blood:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs71569462	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029952	chr6:164463355-165268911	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv886919	chr6:164756364-165079834	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv511924	chr6:164762179-165077399	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1016147	chr6:164765938-165046731	Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:164816600-164817800	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr6:164816600-164818200	Active TSS	Brain Substantia Nigra	brain
3	chr6:164816800-164818400	Active TSS	Brain Cingulate Gyrus	brain
4	chr6:164816800-164818400	Active TSS	Brain Inferior Temporal Lobe	brain
5	chr6:164816800-164818600	Active TSS	Brain Hippocampus Middle	brain
6	chr6:164817000-164817800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr6:164817000-164817800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr6:164817000-164818000	Active TSS	Brain Angular Gyrus	brain
9	chr6:164817000-164818000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
10	chr6:164817000-164818200	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr6:164817000-164818400	Enhancers	Fetal Heart	heart
12	chr6:164817200-164817800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr6:164817200-164817800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr6:164817200-164818000	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr6:164817200-164818000	Enhancers	Breast Myoepithelial Primary Cells	Breast
16	chr6:164817200-164818000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr6:164817200-164818000	Enhancers	Brain Germinal Matrix	brain
18	chr6:164817200-164818000	Active TSS	Duodenum Smooth Muscle	Duodenum
19	chr6:164817200-164818000	Enhancers	Fetal Brain Female	brain
20	chr6:164817200-164818000	Active TSS	NHDF-Ad	bronchial
21	chr6:164817200-164818200	Enhancers	iPS-15b Cell Line	embryonic stem cell
22	chr6:164817200-164818400	Enhancers	Cortex derived primary cultured neurospheres	brain
23	chr6:164817200-164818400	Active TSS	Skeletal Muscle Female	skeletal muscle
24	chr6:164817400-164817800	Enhancers	H9 Cell Line	embryonic stem cell
25	chr6:164817400-164817800	Enhancers	Primary hematopoietic stem cells short term culture	blood
26	chr6:164817400-164817800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr6:164817400-164817800	Flanking Active TSS	Adipose Nuclei	Adipose
28	chr6:164817400-164817800	Flanking Active TSS	Liver	Liver
29	chr6:164817400-164817800	Active TSS	Duodenum Mucosa	Duodenum
30	chr6:164817400-164817800	Enhancers	Fetal Muscle Leg	muscle
31	chr6:164817400-164817800	Enhancers	Stomach Mucosa	stomach
32	chr6:164817400-164817800	Active TSS	HSMM	muscle
33	chr6:164817400-164817800	Flanking Active TSS	NHEK	skin
34	chr6:164817400-164818000	Enhancers	ES-I3 Cell Line	embryonic stem cell
35	chr6:164817400-164818000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
36	chr6:164817400-164818000	Active TSS	Primary T helper cells PMA-I stimulated	--
37	chr6:164817400-164818000	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
38	chr6:164817400-164818000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr6:164817400-164818000	Active TSS	Colon Smooth Muscle	Colon
40	chr6:164817400-164818000	Active TSS	Psoas Muscle	Psoas
41	chr6:164817400-164818000	Active TSS	Rectal Smooth Muscle	rectum
42	chr6:164817400-164818000	Flanking Active TSS	Dnd41	blood
43	chr6:164817400-164818000	Active TSS	HSMMtube	muscle
44	chr6:164817400-164818200	Enhancers	HUES64 Cell Line	embryonic stem cell
45	chr6:164817400-164818200	Enhancers	iPS-18 Cell Line	embryonic stem cell
46	chr6:164817400-164818200	Active TSS	Rectal Mucosa Donor 29	rectum
47	chr6:164817400-164818200	Active TSS	Skeletal Muscle Male	skeletal muscle
48	chr6:164817400-164818200	Active TSS	Stomach Smooth Muscle	stomach
49	chr6:164817400-164818400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr6:164817400-164818400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood

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