Variant report
| Variant | rs73017108 |
|---|---|
| Chromosome Location | chr3:145264250-145264251 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs10513262 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs1351444 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs16856961 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs56753977 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs56777961 | 1.00[EUR][1000 genomes] |
| rs56890976 | 1.00[EUR][1000 genomes] |
| rs57422691 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs57775249 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs57923808 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs58046671 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs58545677 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs58842583 | 1.00[EUR][1000 genomes] |
| rs61409164 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73009253 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73009257 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73011209 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73011216 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73011302 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73013038 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73013047 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73013050 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73013071 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73015126 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73015145 | 1.00[AMR][1000 genomes] |
| rs73017118 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv877584 | chr3:144903957-145833232 | Genic enhancers Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 14 gene(s) | inside rSNPs | diseases |
| 2 | nsv877587 | chr3:144949453-145355433 | Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 3 | esv1839695 | chr3:145225110-145324049 | Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats | TF binding regionChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 4 | nsv1004346 | chr3:145226633-145268800 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS | TF binding regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:145264000-145265200 | Enhancers | iPS-15b Cell Line | embryonic stem cell |
| 2 | chr3:145264200-145265000 | Enhancers | H9 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
