Variant report

Variant	rs73017783
Chromosome Location	chr6:161320164-161320165
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs2096408	1.00[ASN][1000 genomes]
rs60465142	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73017797	1.00[ASN][1000 genomes]
rs73019757	0.87[AFR][1000 genomes]
rs73019760	0.87[AFR][1000 genomes]
rs73019762	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3352911	chr6:161140543-161324358	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv830853	chr6:161180005-161376481	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv2422347	chr6:161211171-161442377	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:161311000-161320600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr6:161311000-161321000	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr6:161313000-161321000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr6:161316400-161320600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr6:161316800-161320600	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr6:161316800-161320800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr6:161316800-161320800	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr6:161316800-161320800	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr6:161317000-161320600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr6:161317000-161320800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr6:161319000-161321200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr6:161319600-161322400	Enhancers	Fetal Intestine Large	intestine
13	chr6:161320000-161322000	Enhancers	Fetal Intestine Small	intestine

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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