Variant report

Variant	rs73017973
Chromosome Location	chr1:160771671-160771672
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12093453	0.89[AFR][1000 genomes]
rs59304405	1.00[AFR][1000 genomes]
rs73019992	1.00[AFR][1000 genomes]
rs73021993	0.90[AFR][1000 genomes]
rs73022000	0.90[AFR][1000 genomes]
rs73025704	0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1822379	chr1:160545332-160831143	Enhancers Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv831714	chr1:160581168-160776809	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv464161	chr1:160747615-160852046	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv548057	chr1:160747615-160852046	Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:160765400-160772200	Enhancers	Dnd41	blood
2	chr1:160768600-160774000	Genic enhancers	Primary B cells from peripheral blood	blood
3	chr1:160768800-160772600	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr1:160769200-160771800	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
5	chr1:160769600-160771800	Transcr. at gene 5' and 3'	Primary T cells from cord blood	blood
6	chr1:160771000-160774400	Genic enhancers	Primary T regulatory cells fromperipheralblood	blood
7	chr1:160771000-160806600	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr1:160771200-160771800	Enhancers	Primary B cells from cord blood	blood
9	chr1:160771200-160773800	Genic enhancers	Primary T cells fromperipheralblood	blood
10	chr1:160771200-160775400	Weak transcription	Duodenum Mucosa	Duodenum
11	chr1:160771400-160772200	Genic enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr1:160771400-160772400	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
13	chr1:160771400-160773000	Enhancers	Primary T killer memory cells from peripheral blood	blood
14	chr1:160771400-160773200	Strong transcription	Fetal Thymus	thymus
15	chr1:160771400-160775600	Genic enhancers	Primary T helper cells fromperipheralblood	blood
16	chr1:160771600-160771800	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr1:160771600-160771800	Enhancers	Gastric	stomach
18	chr1:160771600-160772200	Transcr. at gene 5' and 3'	Primary T helper naive cells fromperipheralblood	blood
19	chr1:160771600-160772400	Genic enhancers	Primary T helper 17 cells PMA-I stimulated	--
20	chr1:160771600-160772400	Genic enhancers	Primary T killer naive cells fromperipheralblood	blood
21	chr1:160771600-160772400	Genic enhancers	Thymus	Thymus
22	chr1:160771600-160772400	Genic enhancers	Spleen	Spleen
23	chr1:160771600-160772600	ZNF genes & repeats	GM12878-XiMat	blood
24	chr1:160771600-160773000	Genic enhancers	Primary mononuclear cells fromperipheralblood	Blood
25	chr1:160771600-160773600	Genic enhancers	Primary T helper memory cells from peripheral blood 2	blood
26	chr1:160771600-160774000	Genic enhancers	Primary T helper cells PMA-I stimulated	--
27	chr1:160771600-160777400	Genic enhancers	Primary T helper naive cells from peripheral blood	blood

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