Variant report

Variant	rs73018508
Chromosome Location	chr6:164502366-164502367
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12333017	0.92[ASN][1000 genomes]
rs16896107	0.96[ASN][1000 genomes]
rs57712676	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73014559	0.93[EUR][1000 genomes]
rs73016592	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73016594	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018860	chr6:163939347-164532579	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv538526	chr6:163939347-164532579	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv1026707	chr6:164188210-164749206	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv538527	chr6:164188210-164749206	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv1029952	chr6:164463355-165268911	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:164484800-164502800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr6:164492600-164504800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:164499200-164505200	Weak transcription	Right Ventricle	heart
4	chr6:164499400-164503800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr6:164499400-164505400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr6:164499600-164506000	Weak transcription	HSMMtube	muscle
7	chr6:164499800-164503400	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr6:164500000-164505200	Weak transcription	Brain Anterior Caudate	brain
9	chr6:164500200-164503000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr6:164500400-164505200	Weak transcription	Right Atrium	heart
11	chr6:164500600-164502400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr6:164501400-164503400	Enhancers	Fetal Muscle Trunk	muscle
13	chr6:164501400-164506800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr6:164501600-164503400	Enhancers	Breast Myoepithelial Primary Cells	Breast
15	chr6:164501800-164505000	Weak transcription	Spleen	Spleen
16	chr6:164502200-164502400	Enhancers	Brain Cingulate Gyrus	brain
17	chr6:164502200-164502400	Enhancers	Fetal Heart	heart
18	chr6:164502200-164502600	Enhancers	HUES6 Cell Line	embryonic stem cell
19	chr6:164502200-164503200	Enhancers	Fetal Muscle Leg	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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