Variant report

Variant	rs73019078
Chromosome Location	chr1:150565381-150565382
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:150547577..150553391-chr1:150562900..150573800,12	MCF-7	breast:
2	chr1:150547964..150550614-chr1:150563444..150566002,2	K562	blood:
3	chr1:150554954..150558805-chr1:150562851..150567781,4	K562	blood:
4	chr1:150564762..150567564-chr1:150569337..150571490,2	K562	blood:
5	chr1:150549380..150556585-chr1:150561290..150565762,10	K562	blood:
6	chr1:150564483..150566353-chr1:150566982..150568614,2	MCF-7	breast:
7	chr1:150562735..150566350-chr1:150574658..150578740,6	K562	blood:
8	chr1:150564933..150567776-chr1:150569439..150573789,3	MCF-7	breast:
9	chr1:150550714..150554417-chr1:150561290..150565440,4	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ADAMTSL4-2	chr1:150565059-150566262	ENSG00000248003

No data

Variant related genes	Relation type
ENSG00000143384	Chromatin interaction
ENSG00000253047	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs16841689	0.94[AFR][1000 genomes]
rs60845143	0.84[AFR][1000 genomes]
rs73008844	0.94[AFR][1000 genomes]
rs73008850	0.94[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006838	chr1:150440214-150722783	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	175 gene(s)	inside rSNPs	diseases
2	nsv535155	chr1:150535349-150582395	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	130 gene(s)	inside rSNPs	diseases
3	nsv535156	chr1:150540117-150575941	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	121 gene(s)	inside rSNPs	diseases
4	nsv535157	chr1:150552692-150575941	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:150553000-150572800	Weak transcription	Thymus	Thymus
2	chr1:150553000-150583200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr1:150553200-150566000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr1:150553200-150568400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr1:150553200-150569400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr1:150553200-150569400	Weak transcription	Fetal Thymus	thymus
7	chr1:150553200-150572600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr1:150553200-150572600	Weak transcription	Fetal Brain Female	brain
9	chr1:150553200-150572800	Weak transcription	Brain Angular Gyrus	brain
10	chr1:150553200-150577600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr1:150553200-150581800	Weak transcription	Stomach Smooth Muscle	stomach
12	chr1:150553200-150581800	Weak transcription	Dnd41	blood
13	chr1:150553200-150583200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
14	chr1:150553200-150592000	Weak transcription	Fetal Kidney	kidney
15	chr1:150553800-150568000	Weak transcription	HSMM	muscle
16	chr1:150553800-150572600	Weak transcription	Lung	lung
17	chr1:150553800-150576800	Weak transcription	Colon Smooth Muscle	Colon
18	chr1:150554000-150568400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr1:150554000-150568600	Weak transcription	Hela-S3	cervix
20	chr1:150554000-150572000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr1:150554000-150583200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
22	chr1:150554200-150568400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
23	chr1:150554400-150572600	Weak transcription	Primary T cells fromperipheralblood	blood
24	chr1:150555400-150568400	Weak transcription	Osteobl	bone
25	chr1:150555400-150572600	Weak transcription	Primary B cells from peripheral blood	blood
26	chr1:150555400-150582600	Weak transcription	Primary B cells from cord blood	blood
27	chr1:150555600-150568400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr1:150555600-150568400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr1:150557200-150568400	Weak transcription	Fetal Intestine Small	intestine
30	chr1:150558800-150568400	Weak transcription	Duodenum Mucosa	Duodenum
31	chr1:150560200-150576000	Weak transcription	Ovary	ovary
32	chr1:150561200-150565800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr1:150561200-150572400	Weak transcription	Fetal Muscle Leg	muscle
34	chr1:150561400-150577000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr1:150561800-150581800	Weak transcription	Brain Substantia Nigra	brain
36	chr1:150562200-150583200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
37	chr1:150563000-150572400	Weak transcription	Brain Hippocampus Middle	brain
38	chr1:150563000-150583800	Weak transcription	Fetal Lung	lung
39	chr1:150564000-150566200	Strong transcription	Fetal Stomach	stomach
40	chr1:150564000-150576200	Weak transcription	HUES64 Cell Line	embryonic stem cell
41	chr1:150564400-150565600	Enhancers	Placenta	Placenta
42	chr1:150564400-150566000	Enhancers	Primary neutrophils fromperipheralblood	blood
43	chr1:150564400-150583800	Weak transcription	Rectal Mucosa Donor 29	rectum
44	chr1:150564600-150565600	Enhancers	Primary monocytes fromperipheralblood	blood
45	chr1:150564800-150565600	Enhancers	Monocytes-CD14+_RO01746	blood
46	chr1:150564800-150565800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
47	chr1:150564800-150569200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
48	chr1:150565000-150572600	Weak transcription	Brain Germinal Matrix	brain

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