Variant report

Variant	rs73019083
Chromosome Location	chr1:152787719-152787720
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10494279	1.00[EUR][1000 genomes]
rs12239944	1.00[EUR][1000 genomes]
rs1332503	1.00[AMR][1000 genomes]
rs1411618	1.00[EUR][1000 genomes]
rs1412544	1.00[AMR][1000 genomes]
rs16834568	1.00[EUR][1000 genomes]
rs16834601	1.00[EUR][1000 genomes]
rs16834602	1.00[EUR][1000 genomes]
rs16834669	1.00[EUR][1000 genomes]
rs16834672	1.00[EUR][1000 genomes]
rs16834674	1.00[EUR][1000 genomes]
rs16834681	1.00[EUR][1000 genomes]
rs16834684	1.00[EUR][1000 genomes]
rs1819432	1.00[EUR][1000 genomes]
rs2339384	1.00[EUR][1000 genomes]
rs2339387	1.00[EUR][1000 genomes]
rs2339388	1.00[EUR][1000 genomes]
rs2339391	1.00[EUR][1000 genomes]
rs2339392	1.00[EUR][1000 genomes]
rs35228950	1.00[AMR][1000 genomes]
rs56907048	1.00[AMR][1000 genomes]
rs58039492	1.00[AMR][1000 genomes]
rs59924783	1.00[AMR][1000 genomes]
rs60012235	1.00[AMR][1000 genomes]
rs60093489	1.00[AMR][1000 genomes]
rs60233557	1.00[AMR][1000 genomes]
rs61270445	1.00[AMR][1000 genomes]
rs73006529	1.00[AMR][1000 genomes]
rs73008517	1.00[EUR][1000 genomes]
rs73014878	1.00[AMR][1000 genomes]
rs73014880	1.00[AMR][1000 genomes]
rs73014888	1.00[AMR][1000 genomes]
rs73014889	1.00[AMR][1000 genomes]
rs73014891	1.00[AMR][1000 genomes]
rs73016703	1.00[AMR][1000 genomes]
rs73016704	1.00[AMR][1000 genomes]
rs73016706	1.00[AMR][1000 genomes]
rs73016707	1.00[AMR][1000 genomes]
rs73016719	1.00[AMR][1000 genomes]
rs73016726	1.00[AMR][1000 genomes]
rs73016787	1.00[AMR][1000 genomes]
rs73016794	1.00[AMR][1000 genomes]
rs73016797	1.00[AMR][1000 genomes]
rs73018617	1.00[AMR][1000 genomes]
rs73018626	1.00[AMR][1000 genomes]
rs73019089	1.00[EUR][1000 genomes]
rs73019090	1.00[EUR][1000 genomes]
rs73021107	1.00[EUR][1000 genomes]
rs73021172	1.00[EUR][1000 genomes]
rs73021184	1.00[EUR][1000 genomes]
rs73023043	1.00[EUR][1000 genomes]
rs73023049	1.00[EUR][1000 genomes]
rs73023054	1.00[EUR][1000 genomes]
rs73023059	1.00[EUR][1000 genomes]
rs73023065	1.00[EUR][1000 genomes]
rs73023068	1.00[EUR][1000 genomes]
rs73023072	1.00[EUR][1000 genomes]
rs7542269	1.00[EUR][1000 genomes]
rs7553765	1.00[EUR][1000 genomes]
rs9724909	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757755	chr1:152472839-152898153	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	esv2758970	chr1:152472839-152898153	ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	nsv427786	chr1:152572990-152898153	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
4	nsv1013433	chr1:152619305-153262215	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases
5	nsv535170	chr1:152619305-153262215	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases
6	nsv1001834	chr1:152648853-153279143	Enhancers Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
7	nsv428521	chr1:152663153-152831578	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
8	nsv947325	chr1:152670204-152793272	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
9	nsv547899	chr1:152672005-153245082	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
10	nsv999918	chr1:152749733-152861866	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
11	nsv1009885	chr1:152762750-152851273	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:152784200-152789400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr1:152784200-152789600	Weak transcription	NHEK	skin
3	chr1:152784400-152789600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr1:152784400-152789600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr1:152784400-152789600	Weak transcription	HMEC	breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links