Variant report

Variant	rs7301920
Chromosome Location	chr12:119075286-119075287
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10851006	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10851015	0.90[EUR][1000 genomes]
rs11069011	0.96[ASN][1000 genomes]
rs11069050	0.93[ASN][1000 genomes]
rs11610340	0.86[JPT][hapmap]
rs11614043	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11614956	0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1402339	0.83[ASN][1000 genomes]
rs1402340	0.83[ASN][1000 genomes]
rs1818055	0.84[ASN][1000 genomes]
rs1851093	0.86[JPT][hapmap]
rs2088679	0.89[EUR][1000 genomes]
rs2203993	0.83[ASN][1000 genomes]
rs2248364	0.84[ASN][1000 genomes]
rs2248365	0.84[ASN][1000 genomes]
rs4387413	0.88[EUR][1000 genomes]
rs4767703	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv930978	chr12:118866332-119450600	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv1043906	chr12:118991884-119087146	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:119074200-119076000	Weak transcription	Liver	Liver
2	chr12:119075200-119076400	Enhancers	Fetal Brain Male	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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