Variant report

Variant	rs73019627
Chromosome Location	chr2:173930081-173930082
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12619395	0.90[ASN][1000 genomes]
rs12623346	0.85[ASN][1000 genomes]
rs16861227	0.90[ASN][1000 genomes]
rs17760587	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3769202	0.96[EUR][1000 genomes]
rs752729	0.95[ASN][1000 genomes]
rs7562681	1.00[ASN][1000 genomes]
rs7603458	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011724	chr2:173916482-174231908	Enhancers Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv834460	chr2:173919464-174085288	Strong transcription Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	esv2606171	chr2:173928830-173930264	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:173920600-173937200	Weak transcription	Psoas Muscle	Psoas
2	chr2:173925200-173930400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr2:173928400-173932400	Weak transcription	Fetal Intestine Large	intestine
4	chr2:173928600-173930200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr2:173928800-173930600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr2:173929200-173932200	Weak transcription	Fetal Intestine Small	intestine
7	chr2:173929400-173931600	Weak transcription	Fetal Lung	lung
8	chr2:173930000-173930200	Enhancers	Ovary	ovary

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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