Variant report

Variant	rs73019802
Chromosome Location	chr2:168236017-168236018
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs16853548	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16853556	0.96[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73021706	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73021707	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73021722	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73021724	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73021736	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73021738	0.96[AFR][1000 genomes]
rs73021750	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73021753	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73021757	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875378	chr2:168107491-168297961	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
2	esv3364733	chr2:168109919-168302141	Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
3	nsv431790	chr2:168217873-168273530	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv491872	chr2:168220323-168737986	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:168232600-168237400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr2:168233000-168236200	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr2:168233000-168236400	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr2:168233000-168237200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr2:168233000-168238000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr2:168235000-168236400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr2:168235400-168236600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr2:168236000-168236400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr2:168236000-168237200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr2:168236000-168237200	Enhancers	Rectal Mucosa Donor 31	rectum

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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