Variant report

Variant	rs73019903
Chromosome Location	chr11:121837586-121837587
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12797683	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73018001	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73019904	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73019905	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7926248	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7934853	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv556478	chr11:121816920-121840829	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv898429	chr11:121833245-121897762	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:121830200-121837600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr11:121833200-121837600	Weak transcription	Brain Substantia Nigra	brain
3	chr11:121833600-121837800	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr11:121833600-121840400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr11:121833800-121837600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr11:121835200-121839600	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr11:121836000-121837600	Weak transcription	Brain Germinal Matrix	brain
8	chr11:121836000-121840200	Weak transcription	HSMMtube	muscle
9	chr11:121837200-121837600	Enhancers	Brain Hippocampus Middle	brain
10	chr11:121837200-121839800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr11:121837400-121837800	Enhancers	Brain Anterior Caudate	brain
12	chr11:121837400-121838200	Enhancers	Brain Angular Gyrus	brain
13	chr11:121837400-121838600	Enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr11:121837400-121838600	Enhancers	Brain Cingulate Gyrus	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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