Variant report

Variant	rs73020873
Chromosome Location	chr1:150145668-150145669
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:150140629..150143823-chr1:150143932..150146030,3	K562	blood:
2	chr1:150144466..150147427-chr1:150151082..150153149,2	K562	blood:
3	chr1:150037002..150041153-chr1:150141098..150145736,5	MCF-7	breast:
4	chr1:150145555..150147909-chr1:150159184..150161241,2	K562	blood:
5	chr1:150136389..150137930-chr1:150144546..150147422,2	K562	blood:
6	chr1:150143512..150147427-chr1:150151082..150153697,4	K562	blood:
7	chr1:149854077..149861961-chr1:150131511..150145996,30	MCF-7	breast:
8	chr1:150144058..150146059-chr1:150151380..150153165,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000178096	Chromatin interaction
ENSG00000184260	Chromatin interaction
ENSG00000184270	Chromatin interaction
ENSG00000184678	Chromatin interaction
ENSG00000136631	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs3118122	1.00[AMR][1000 genomes]
rs57594441	1.00[AMR][1000 genomes]
rs60033047	1.00[AMR][1000 genomes]
rs60883600	1.00[AMR][1000 genomes]
rs61752307	1.00[EUR][1000 genomes]
rs73005621	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73010199	1.00[AMR][1000 genomes]
rs73010202	1.00[AMR][1000 genomes]
rs73011280	1.00[EUR][1000 genomes]
rs73011283	1.00[EUR][1000 genomes]
rs73011288	1.00[EUR][1000 genomes]
rs73020871	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74124314	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529719	chr1:150006344-150311095	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	100 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:150136400-150148800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr1:150138400-150157800	Weak transcription	Small Intestine	intestine
3	chr1:150141600-150148800	Weak transcription	GM12878-XiMat	blood
4	chr1:150141600-150150000	Weak transcription	Primary B cells from cord blood	blood
5	chr1:150141600-150158600	Weak transcription	Primary B cells from peripheral blood	blood
6	chr1:150143200-150147000	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr1:150143600-150148400	Weak transcription	Primary neutrophils fromperipheralblood	blood
8	chr1:150143800-150146400	Enhancers	Fetal Intestine Small	intestine
9	chr1:150144000-150146200	Enhancers	Fetal Intestine Large	intestine
10	chr1:150144200-150146400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr1:150144600-150147200	Weak transcription	Primary monocytes fromperipheralblood	blood
12	chr1:150145000-150145800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr1:150145000-150145800	Enhancers	Stomach Mucosa	stomach
14	chr1:150145000-150146000	Enhancers	Liver	Liver
15	chr1:150145200-150145800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr1:150145200-150145800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr1:150145200-150145800	Enhancers	Sigmoid Colon	Sigmoid Colon
18	chr1:150145200-150145800	Enhancers	Hela-S3	cervix
19	chr1:150145200-150146000	Enhancers	ES-I3 Cell Line	embryonic stem cell
20	chr1:150145200-150146000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
21	chr1:150145200-150146000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr1:150145200-150146000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr1:150145200-150146000	Enhancers	HUES6 Cell Line	embryonic stem cell
24	chr1:150145200-150146000	Enhancers	HepG2	liver
25	chr1:150145200-150146000	Enhancers	NH-A	brain
26	chr1:150145200-150146200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr1:150145200-150146200	Enhancers	Brain Anterior Caudate	brain
28	chr1:150145400-150145800	Enhancers	H1 Cell Line	embryonic stem cell
29	chr1:150145400-150145800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr1:150145400-150145800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr1:150145400-150145800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr1:150145400-150145800	Enhancers	Breast Myoepithelial Primary Cells	Breast
33	chr1:150145400-150145800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr1:150145400-150145800	Enhancers	Placenta Amnion	Placenta Amnion
35	chr1:150145400-150145800	Enhancers	Right Atrium	heart
36	chr1:150145400-150145800	Enhancers	NHDF-Ad	bronchial
37	chr1:150145400-150146000	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr1:150145400-150146000	Enhancers	HUES64 Cell Line	embryonic stem cell
39	chr1:150145400-150146000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr1:150145400-150146000	Enhancers	HSMM	muscle
41	chr1:150145400-150146000	Enhancers	HSMMtube	muscle
42	chr1:150145400-150146400	Enhancers	Cortex derived primary cultured neurospheres	brain
43	chr1:150145400-150146400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr1:150145400-150153000	Weak transcription	Brain Substantia Nigra	brain
45	chr1:150145600-150145800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
46	chr1:150145600-150145800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr1:150145600-150146200	Flanking Active TSS	Duodenum Mucosa	Duodenum
48	chr1:150145600-150146400	Enhancers	iPS-20b Cell Line	embryonic stem cell
49	chr1:150145600-150148400	Weak transcription	Adipose Nuclei	Adipose

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