Variant report

Variant	rs73021203
Chromosome Location	chr1:161931502-161931503
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:161922486..161924980-chr1:161928759..161931643,3	K562	blood:
2	chr1:161930299..161933579-chr1:161936760..161939444,3	K562	blood:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10494361	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1394065	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16832983	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16834361	0.85[EUR][1000 genomes]
rs16852851	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs41271953	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41271955	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41271959	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4532807	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61104653	0.84[ASN][1000 genomes]
rs73019349	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73019352	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs74125022	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs74125028	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33393	chr1:161478681-162080327	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
2	nsv464206	chr1:161798239-162067447	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv470744	chr1:161798239-162067447	Strong transcription Flanking Active TSS Weak transcription Enhancers Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv548077	chr1:161798239-162067447	Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
5	nsv1007108	chr1:161925814-162002917	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
6	nsv831747	chr1:161926367-162103311	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:161861600-161936000	Weak transcription	Fetal Intestine Small	intestine
2	chr1:161897800-161940000	Weak transcription	Brain Germinal Matrix	brain
3	chr1:161901400-161935400	Weak transcription	Fetal Lung	lung
4	chr1:161902800-161943400	Weak transcription	Esophagus	oesophagus
5	chr1:161904800-161956600	Weak transcription	Fetal Brain Male	brain
6	chr1:161906800-161932200	Weak transcription	Stomach Mucosa	stomach
7	chr1:161911000-161937200	Weak transcription	Gastric	stomach
8	chr1:161911600-161939400	Weak transcription	HepG2	liver
9	chr1:161912600-161941600	Weak transcription	Fetal Kidney	kidney
10	chr1:161913600-161931600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr1:161914000-161932000	Weak transcription	Aorta	Aorta
12	chr1:161916200-161935600	Weak transcription	Fetal Muscle Trunk	muscle
13	chr1:161924200-161931600	Weak transcription	Brain Anterior Caudate	brain
14	chr1:161924200-161932200	Weak transcription	Brain Angular Gyrus	brain
15	chr1:161924400-161931800	Weak transcription	A549	lung
16	chr1:161924600-161931600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
17	chr1:161924600-161931600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
18	chr1:161924600-161931600	Weak transcription	Brain Substantia Nigra	brain
19	chr1:161924600-161931600	Weak transcription	Small Intestine	intestine
20	chr1:161924600-161932000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
21	chr1:161925000-161937600	Weak transcription	Pancreatic Islets	Pancreatic Islet
22	chr1:161925400-161931600	Weak transcription	Colon Smooth Muscle	Colon
23	chr1:161925400-161932200	Strong transcription	Primary B cells from peripheral blood	blood
24	chr1:161925600-161931600	Strong transcription	Monocytes-CD14+_RO01746	blood
25	chr1:161926200-161939400	Weak transcription	Fetal Heart	heart
26	chr1:161926200-161942200	Weak transcription	Right Ventricle	heart
27	chr1:161926400-161932000	Weak transcription	Placenta Amnion	Placenta Amnion
28	chr1:161926800-161932000	Weak transcription	HUES64 Cell Line	embryonic stem cell
29	chr1:161926800-161935200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
30	chr1:161927000-161933600	Strong transcription	Primary T cells from cord blood	blood
31	chr1:161927000-161944000	Weak transcription	Colonic Mucosa	Colon
32	chr1:161927200-161931600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
33	chr1:161927400-161933800	Strong transcription	Dnd41	blood
34	chr1:161927600-161933800	Strong transcription	Primary hematopoietic stem cells	blood
35	chr1:161927800-161933600	Strong transcription	Liver	Liver
36	chr1:161927800-161937600	Strong transcription	Primary B cells from cord blood	blood
37	chr1:161928200-161938000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
38	chr1:161928200-161938800	Weak transcription	Brain Inferior Temporal Lobe	brain
39	chr1:161928400-161941800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
40	chr1:161928600-161939000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr1:161929000-161931600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr1:161929000-161931600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr1:161929000-161931600	Weak transcription	Brain Cingulate Gyrus	brain
44	chr1:161929000-161931800	Weak transcription	Duodenum Smooth Muscle	Duodenum
45	chr1:161929000-161943800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
46	chr1:161929200-161931600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
47	chr1:161929200-161931600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
48	chr1:161929200-161931600	Weak transcription	Brain Hippocampus Middle	brain
49	chr1:161929200-161931800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr1:161929200-161932000	Weak transcription	Stomach Smooth Muscle	stomach

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