Variant report

Variant	rs7302127
Chromosome Location	chr12:117347885-117347886
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Variant related genes	Relation type
ENSG00000135119	Chromatin interaction
ENSG00000111412	Chromatin interaction
ENSG00000135116	Chromatin interaction
ENSG00000240100	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10735100	0.88[CEU][hapmap]
rs10774895	0.81[CEU][hapmap]
rs10774898	0.92[CEU][hapmap];0.82[JPT][hapmap]
rs10850734	0.88[CEU][hapmap]
rs11068292	0.83[CEU][hapmap]
rs2291916	0.92[CEU][hapmap];0.82[JPT][hapmap]
rs2393113	0.88[CEU][hapmap]
rs4766816	0.88[CEU][hapmap]
rs4766823	0.92[CEU][hapmap];0.82[JPT][hapmap]
rs4767477	0.92[CEU][hapmap];0.82[JPT][hapmap]
rs6490103	0.87[CEU][hapmap]
rs7133090	0.92[CEU][hapmap];0.82[JPT][hapmap]
rs7486428	0.92[CEU][hapmap];0.82[JPT][hapmap]
rs7487081	0.83[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832524	chr12:117314110-117496576	Weak transcription Strong transcription Enhancers ZNF genes & repeats Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:117344600-117348200	Weak transcription	K562	blood
2	chr12:117345000-117348400	Weak transcription	Right Atrium	heart
3	chr12:117345400-117348200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr12:117347800-117348200	Enhancers	Primary T helper naive cells fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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