Variant report

Variant	rs73021768
Chromosome Location	chr3:160164576-160164577
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:160121669..160124122-chr3:160164375..160167615,4	MCF-7	breast:
2	chr3:160164299..160166121-chr3:160258126..160260628,2	MCF-7	breast:
3	chr3:160116116..160127665-chr3:160158037..160169627,42	K562	blood:
4	chr3:160129823..160131847-chr3:160164070..160166164,2	K562	blood:
5	chr3:160162127..160164751-chr3:160280625..160284540,4	K562	blood:
6	chr3:160164471..160170330-chr3:160281681..160284179,8	K562	blood:
7	chr3:160146955..160148918-chr3:160163832..160165589,2	K562	blood:
8	chr3:160164188..160165743-chr3:160181763..160184603,2	K562	blood:
9	chr3:160116116..160124648-chr3:160162504..160168767,20	K562	blood:
10	chr3:160124957..160126524-chr3:160162732..160165262,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000113810	Chromatin interaction
ENSG00000207779	Chromatin interaction
ENSG00000186432	Chromatin interaction
ENSG00000068885	Chromatin interaction
ENSG00000229320	Chromatin interaction
ENSG00000198987	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs60668380	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61243999	1.00[EUR][1000 genomes]
rs73019761	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73019794	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73023851	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73023853	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73023868	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73023874	1.00[AMR][1000 genomes]
rs73024007	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73024037	1.00[EUR][1000 genomes]
rs73024040	1.00[EUR][1000 genomes]
rs73024042	1.00[EUR][1000 genomes]
rs73024043	1.00[EUR][1000 genomes]
rs73024059	1.00[EUR][1000 genomes]
rs73024070	1.00[EUR][1000 genomes]
rs73024090	1.00[EUR][1000 genomes]
rs7626241	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532666	chr3:159777847-160703202	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases
2	nsv1000453	chr3:159853305-160366357	Active TSS Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	259 gene(s)	inside rSNPs	diseases
3	nsv536779	chr3:159853305-160366357	Strong transcription Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	259 gene(s)	inside rSNPs	diseases
4	esv1800136	chr3:159950498-160278160	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
5	esv1801767	chr3:159950498-160279411	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
6	nsv1008519	chr3:160038710-160292589	Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Enhancers Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	255 gene(s)	inside rSNPs	diseases
7	esv1801686	chr3:160089896-160248363	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	211 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:160122000-160164600	Strong transcription	HUES48 Cell Line	embryonic stem cell
2	chr3:160130000-160166200	Weak transcription	Colon Smooth Muscle	Colon
3	chr3:160133800-160164600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
4	chr3:160140800-160166600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr3:160143600-160166600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr3:160145600-160166800	Weak transcription	Right Atrium	heart
7	chr3:160146000-160165400	Weak transcription	Aorta	Aorta
8	chr3:160146000-160167000	Weak transcription	Pancreas	Pancrea
9	chr3:160146400-160166200	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr3:160147000-160166200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr3:160150600-160166000	Weak transcription	Fetal Brain Female	brain
12	chr3:160151000-160166600	Weak transcription	Small Intestine	intestine
13	chr3:160151000-160166800	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr3:160152200-160165200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr3:160152400-160166000	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr3:160152600-160165200	Weak transcription	Hela-S3	cervix
17	chr3:160152600-160166200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr3:160153200-160166200	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr3:160153400-160166600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr3:160154000-160164600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr3:160154200-160165200	Weak transcription	Cortex derived primary cultured neurospheres	brain
22	chr3:160154200-160165400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr3:160154600-160166400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
24	chr3:160155000-160165200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr3:160155000-160166600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
26	chr3:160155000-160167000	Weak transcription	Placenta	Placenta
27	chr3:160156400-160165200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr3:160156600-160165200	Weak transcription	Primary hematopoietic stem cells	blood
29	chr3:160156800-160165400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
30	chr3:160156800-160166200	Weak transcription	Duodenum Mucosa	Duodenum
31	chr3:160157000-160166600	Weak transcription	Primary neutrophils fromperipheralblood	blood
32	chr3:160157000-160166600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
33	chr3:160157400-160165200	Weak transcription	NH-A	brain
34	chr3:160158800-160164800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr3:160158800-160165200	Weak transcription	Primary B cells from cord blood	blood
36	chr3:160158800-160166400	Weak transcription	Primary monocytes fromperipheralblood	blood
37	chr3:160159000-160165400	Weak transcription	Monocytes-CD14+_RO01746	blood
38	chr3:160159800-160164800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
39	chr3:160161000-160164800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr3:160161000-160166400	Weak transcription	Primary B cells from peripheral blood	blood
41	chr3:160161000-160166600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
42	chr3:160162200-160164600	Strong transcription	H1 Cell Line	embryonic stem cell
43	chr3:160162200-160164600	Strong transcription	HSMMtube	muscle
44	chr3:160162400-160165000	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr3:160162600-160165200	Weak transcription	NHDF-Ad	bronchial
46	chr3:160162600-160165400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr3:160162600-160166000	Weak transcription	HepG2	liver
48	chr3:160162600-160166200	Weak transcription	Fetal Muscle Leg	muscle
49	chr3:160162600-160166800	Weak transcription	Ovary	ovary
50	chr3:160162800-160165200	Weak transcription	Primary T cells from cord blood	blood

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