Variant report

Variant	rs73022118
Chromosome Location	chr6:165984677-165984678
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs55696588	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3417270	chr6:165682773-166023032	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv886928	chr6:165722345-166197889	Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1027811	chr6:165883001-165985711	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv538533	chr6:165883001-165985711	Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv1016999	chr6:165979351-166480502	Enhancers Strong transcription Genic enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
6	nsv538534	chr6:165979351-166480502	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:165980000-165986200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr6:165982200-165986000	Weak transcription	Left Ventricle	heart
3	chr6:165982600-165995000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr6:165982800-165987000	Enhancers	A549	lung
5	chr6:165983200-165984800	Weak transcription	Fetal Kidney	kidney
6	chr6:165983400-165986400	Weak transcription	HUVEC	blood vessel
7	chr6:165983600-165988800	Enhancers	HSMM	muscle
8	chr6:165984000-165986600	Enhancers	Placenta Amnion	Placenta Amnion
9	chr6:165984200-165985000	Enhancers	HSMMtube	muscle
10	chr6:165984200-165991000	Enhancers	Hela-S3	cervix
11	chr6:165984400-165985800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
12	chr6:165984400-165985800	Enhancers	Osteobl	bone
13	chr6:165984400-165986000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr6:165984400-165986600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr6:165984400-165987000	Enhancers	Fetal Heart	heart
16	chr6:165984400-165989200	Enhancers	NH-A	brain
17	chr6:165984600-165985000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr6:165984600-165985200	Enhancers	Right Ventricle	heart
19	chr6:165984600-165986000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr6:165984600-165986200	Enhancers	Primary hematopoietic stem cells short term culture	blood
21	chr6:165984600-165986600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr6:165984600-165988800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr6:165984600-165989000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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