Variant report
| Variant | rs73023591 |
|---|---|
| Chromosome Location | chr1:170139194-170139195 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs11526503 | 1.00[EUR][1000 genomes] |
| rs12031030 | 1.00[EUR][1000 genomes] |
| rs12032699 | 1.00[EUR][1000 genomes] |
| rs12036604 | 1.00[EUR][1000 genomes] |
| rs12038006 | 1.00[EUR][1000 genomes] |
| rs1330369 | 1.00[EUR][1000 genomes] |
| rs16862963 | 1.00[EUR][1000 genomes] |
| rs16862985 | 1.00[EUR][1000 genomes] |
| rs56694179 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs56919297 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs58179539 | 1.00[EUR][1000 genomes] |
| rs61631513 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs61745741 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6686398 | 1.00[EUR][1000 genomes] |
| rs73023503 | 1.00[EUR][1000 genomes] |
| rs73023515 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73035095 | 0.80[AFR][1000 genomes] |
| rs73039130 | 0.80[AFR][1000 genomes] |
| rs73041152 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73041162 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs74122307 | 1.00[EUR][1000 genomes] |
| rs74122310 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1014033 | chr1:169968488-170453021 | Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 18 gene(s) | inside rSNPs | diseases |
| 2 | nsv535200 | chr1:169968488-170453021 | Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 18 gene(s) | inside rSNPs | diseases |
| 3 | nsv999310 | chr1:170065943-170223350 | Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 8 gene(s) | inside rSNPs | diseases |
| 4 | nsv3454 | chr1:170134880-170149447 | Weak transcription Enhancers Active TSS Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:170132400-170140200 | Weak transcription | Right Ventricle | heart |
| 2 | chr1:170132800-170140600 | Weak transcription | Fetal Heart | heart |
