Variant report

Variant	rs73024993
Chromosome Location	chr2:172452473-172452474
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:172443186..172445133-chr2:172451664..172453720,2	K562	blood:

Variant related genes	Relation type
ENSG00000233934	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs73024996	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1832950	chr2:172283513-172488111	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv997638	chr2:172442205-172560406	Weak transcription Flanking Active TSS Genic enhancers Active TSS Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:172451800-172452800	Enhancers	HMEC	breast
2	chr2:172451800-172453000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr2:172451800-172453000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr2:172451800-172453000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr2:172451800-172453000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr2:172451800-172453200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr2:172451800-172453200	Enhancers	NHDF-Ad	bronchial
8	chr2:172451800-172453200	Enhancers	NHEK	skin
9	chr2:172452000-172452800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr2:172452000-172452800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr2:172452000-172452800	Enhancers	Esophagus	oesophagus
12	chr2:172452000-172452800	Enhancers	HSMM	muscle
13	chr2:172452000-172452800	Enhancers	HSMMtube	muscle
14	chr2:172452000-172452800	Flanking Active TSS	Osteobl	bone
15	chr2:172452000-172453000	Enhancers	Muscle Satellite Cultured Cells	--
16	chr2:172452000-172453000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr2:172452000-172453000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr2:172452000-172453000	Enhancers	A549	lung
19	chr2:172452000-172453000	Enhancers	Hela-S3	cervix
20	chr2:172452000-172453000	Enhancers	NH-A	brain
21	chr2:172452000-172453000	Enhancers	NHLF	lung
22	chr2:172452000-172453200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
23	chr2:172452400-172453200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr2:172452400-172453200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr2:172452400-172454800	Weak transcription	Adipose Nuclei	Adipose

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