Variant report

Variant	rs73025462
Chromosome Location	chr5:5321567-5321568
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs1560066	1.00[AFR][1000 genomes]
rs16875231	1.00[AFR][1000 genomes]
rs16875264	1.00[AFR][1000 genomes]
rs16875291	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024784	chr5:4980979-5391231	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1032719	chr5:5102763-5387406	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv537621	chr5:5102763-5387406	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:5305600-5326200	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr5:5311400-5324800	Weak transcription	Ovary	ovary
3	chr5:5314400-5326200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr5:5315200-5325800	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr5:5318400-5324800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr5:5318400-5325200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr5:5319600-5326000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr5:5319800-5324800	Weak transcription	Spleen	Spleen
9	chr5:5320000-5324000	Weak transcription	Fetal Muscle Trunk	muscle
10	chr5:5320000-5331200	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr5:5320600-5324800	Weak transcription	Fetal Muscle Leg	muscle
12	chr5:5321000-5325800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr5:5321400-5321600	ZNF genes & repeats	Fetal Kidney	kidney
14	chr5:5321400-5325600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links