Variant report

Variant	rs73026676
Chromosome Location	chr1:158077387-158077388
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:158076644..158078412-chr1:178914698..178917476,2	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs60047262	0.87[AFR][1000 genomes]
rs73012216	0.81[AFR][1000 genomes]
rs73012227	0.81[AFR][1000 genomes]
rs73012230	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999542	chr1:158015715-158368132	Bivalent Enhancer Genic enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv523208	chr1:158022217-158088687	Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription Weak transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:158067000-158082800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr1:158068000-158078200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr1:158068200-158078000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr1:158070200-158077600	Enhancers	H9 Cell Line	embryonic stem cell
5	chr1:158073400-158078200	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr1:158073400-158078800	Weak transcription	Thymus	Thymus
7	chr1:158074000-158078200	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr1:158074000-158079000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr1:158074400-158078200	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr1:158075400-158077400	Weak transcription	Fetal Intestine Small	intestine
11	chr1:158075600-158082400	Weak transcription	Fetal Kidney	kidney
12	chr1:158075800-158077800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr1:158075800-158078200	Enhancers	iPS-18 Cell Line	embryonic stem cell
14	chr1:158076000-158077400	Weak transcription	Fetal Intestine Large	intestine
15	chr1:158076000-158078200	Enhancers	HUES64 Cell Line	embryonic stem cell
16	chr1:158076200-158077600	Enhancers	HUES6 Cell Line	embryonic stem cell
17	chr1:158076200-158077800	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr1:158076200-158078400	Enhancers	iPS-20b Cell Line	embryonic stem cell
19	chr1:158076600-158077600	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr1:158076600-158079400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr1:158076600-158083000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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