Variant report

Variant	rs7302908
Chromosome Location	chr12:123222033-123222034
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs60201019	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs7302768	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7978294	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899571	chr12:123215734-123363562	Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:123219000-123222200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr12:123219000-123222600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr12:123219000-123222800	Weak transcription	Primary neutrophils fromperipheralblood	blood
4	chr12:123219000-123222800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr12:123220000-123222200	Weak transcription	K562	blood
6	chr12:123221800-123223200	Enhancers	HepG2	liver
7	chr12:123222000-123224000	Enhancers	Primary hematopoietic stem cells	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links