Variant report

Variant	rs73029359
Chromosome Location	chr1:170253604-170253605
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1100832	1.00[AMR][1000 genomes]
rs478117	1.00[AMR][1000 genomes]
rs501645	1.00[AMR][1000 genomes]
rs513660	1.00[AMR][1000 genomes]
rs514753	1.00[AMR][1000 genomes]
rs73029347	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73029361	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73029368	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014033	chr1:169968488-170453021	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
2	nsv535200	chr1:169968488-170453021	Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
3	nsv872543	chr1:170171083-170674903	Weak transcription Flanking Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:170253200-170253800	Active TSS	Brain Hippocampus Middle	brain
2	chr1:170253200-170254000	Enhancers	NHDF-Ad	bronchial
3	chr1:170253200-170254600	Enhancers	Fetal Brain Male	brain
4	chr1:170253400-170254000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr1:170253400-170254000	Active TSS	Brain Cingulate Gyrus	brain
6	chr1:170253400-170254200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr1:170253600-170253800	Flanking Active TSS	Osteobl	bone
8	chr1:170253600-170254000	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr1:170253600-170254000	Flanking Active TSS	Aorta	Aorta
10	chr1:170253600-170254000	Enhancers	Fetal Muscle Leg	muscle
11	chr1:170253600-170254400	Enhancers	Cortex derived primary cultured neurospheres	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links