Variant report

Variant	rs73029949
Chromosome Location	chr19:35731240-35731241
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr19:35730623..35733503-chr19:35747196..35750566,3	K562	blood:
2	chr19:35722038..35724906-chr19:35729951..35732599,2	MCF-7	breast:
3	chr19:35729081..35731637-chr19:35744746..35747518,2	MCF-7	breast:
4	chr19:35728933..35734246-chr19:35734922..35738680,5	K562	blood:

Variant related genes	Relation type
ENSG00000262497	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10416533	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12459658	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17173026	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1882695	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2005927	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2280746	0.90[EUR][1000 genomes]
rs4805116	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4806114	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4806115	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4806121	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4806125	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55745204	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55863037	0.90[EUR][1000 genomes]
rs55877896	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs56002756	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66868858	0.90[EUR][1000 genomes]
rs73045840	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73045852	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73045860	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7508022	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432045	chr19:35556260-36520760	Flanking Active TSS Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	191 gene(s)	inside rSNPs	diseases
2	nsv1060100	chr19:35658505-36170042	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv543993	chr19:35658505-36170042	Enhancers Strong transcription Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
4	nsv1066553	chr19:35698638-35749563	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	47 gene(s)	inside rSNPs	diseases
5	esv2763203	chr19:35700047-35738400	Flanking Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
6	nsv510765	chr19:35708226-35890668	Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
7	esv2758497	chr19:35711078-35887113	Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
8	esv2758758	chr19:35711078-35887113	Bivalent Enhancer Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
9	nsv978896	chr19:35724047-35748472	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:35729600-35732000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr19:35729600-35732200	Enhancers	Primary T killer memory cells from peripheral blood	blood
3	chr19:35730000-35731600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
4	chr19:35730200-35731800	Enhancers	Primary T helper naive cells from peripheral blood	blood
5	chr19:35730200-35732400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
6	chr19:35730200-35732400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
7	chr19:35730400-35732600	Enhancers	Primary T helper cells PMA-I stimulated	--
8	chr19:35730800-35731800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr19:35730800-35732000	Enhancers	Primary B cells from peripheral blood	blood
10	chr19:35730800-35732400	Enhancers	Primary T helper cells fromperipheralblood	blood
11	chr19:35730800-35732600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
12	chr19:35731000-35731800	Enhancers	Primary T cells from cord blood	blood
13	chr19:35731000-35731800	Enhancers	Primary hematopoietic stem cells short term culture	blood
14	chr19:35731000-35732000	Enhancers	Primary B cells from cord blood	blood
15	chr19:35731000-35732000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr19:35731000-35732000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
17	chr19:35731000-35732200	Enhancers	Primary monocytes fromperipheralblood	blood
18	chr19:35731200-35731400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
19	chr19:35731200-35731600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr19:35731200-35731600	Flanking Active TSS	GM12878-XiMat	blood
21	chr19:35731200-35732000	Enhancers	Primary T cells fromperipheralblood	blood
22	chr19:35731200-35732000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
23	chr19:35731200-35732400	Enhancers	Primary T regulatory cells fromperipheralblood	blood

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