Variant report

Variant	rs73030701
Chromosome Location	chr6:166752751-166752752
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:166687858..166689609-chr6:166751857..166754422,2	K562	blood:
2	chr6:166751664..166755250-chr6:166772904..166776274,3	K562	blood:
3	chr6:166748322..166751240-chr6:166751244..166753150,2	MCF-7	breast:
4	chr6:166751804..166757558-chr6:166793969..166799153,5	K562	blood:
5	chr6:166750705..166753304-chr6:166793796..166795469,2	K562	blood:
6	chr6:166722256..166724406-chr6:166752301..166754007,2	MCF-7	breast:
7	chr6:166698710..166701539-chr6:166750702..166753192,3	K562	blood:
8	chr6:166750967..166754365-chr6:166755785..166758738,3	MCF-7	breast:
9	chr6:166751208..166754791-chr6:166757264..166760335,3	MCF-7	breast:
10	chr6:166751783..166754110-chr6:166780871..166783189,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000198818	Chromatin interaction
ENSG00000261420	Chromatin interaction
ENSG00000060762	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10455809	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10455976	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10455977	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10455978	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10946152	0.88[EUR][1000 genomes]
rs10946158	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10946160	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10946161	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11551053	0.92[ASN][1000 genomes]
rs11752886	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11753652	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11755305	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12198613	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12209616	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12214281	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12214812	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12662920	0.80[EUR][1000 genomes]
rs12662924	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1599841	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2294333	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2294334	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2294335	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4144886	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4144887	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4144888	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55936781	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs59337176	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs66461381	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs68016351	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73263155	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73788236	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7753161	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7767887	0.86[ASN][1000 genomes]
rs7771603	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs941683	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3490076	chr6:166727901-167306743	Strong transcription Weak transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
2	esv3490077	chr6:166727901-167306743	Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:166733200-166753600	Weak transcription	Fetal Heart	heart
2	chr6:166733800-166753800	Weak transcription	Hela-S3	cervix
3	chr6:166734600-166754800	Weak transcription	HUVEC	blood vessel
4	chr6:166738200-166754200	Weak transcription	NH-A	brain
5	chr6:166739400-166755400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr6:166742600-166754000	Weak transcription	Fetal Kidney	kidney
7	chr6:166744400-166754800	Weak transcription	NHDF-Ad	bronchial
8	chr6:166745400-166754400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr6:166745400-166755000	Weak transcription	A549	lung
10	chr6:166746200-166752800	Strong transcription	Fetal Intestine Small	intestine
11	chr6:166746200-166753800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr6:166746200-166754800	Genic enhancers	Primary B cells from peripheral blood	blood
13	chr6:166747000-166753400	Weak transcription	Fetal Brain Male	brain
14	chr6:166747200-166754600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr6:166747600-166753000	Strong transcription	Fetal Muscle Leg	muscle
16	chr6:166747600-166753800	Weak transcription	Rectal Smooth Muscle	rectum
17	chr6:166747600-166754000	Strong transcription	Fetal Stomach	stomach
18	chr6:166747800-166755000	Enhancers	Primary T killer memory cells from peripheral blood	blood
19	chr6:166748000-166753000	Strong transcription	K562	blood
20	chr6:166748000-166754000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr6:166748200-166752800	Weak transcription	Small Intestine	intestine
22	chr6:166748200-166754400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr6:166748200-166754800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
24	chr6:166748400-166754600	Strong transcription	HUES6 Cell Line	embryonic stem cell
25	chr6:166748600-166753200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
26	chr6:166748600-166753800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
27	chr6:166749400-166754000	Weak transcription	Osteobl	bone
28	chr6:166749400-166754800	Weak transcription	H1 Cell Line	embryonic stem cell
29	chr6:166750600-166753400	Genic enhancers	Thymus	Thymus
30	chr6:166750600-166754800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
31	chr6:166750800-166755000	Enhancers	Primary T helper naive cells from peripheral blood	blood
32	chr6:166750800-166755000	Weak transcription	Aorta	Aorta
33	chr6:166751000-166753400	Weak transcription	Duodenum Smooth Muscle	Duodenum
34	chr6:166751000-166753800	Weak transcription	Rectal Mucosa Donor 31	rectum
35	chr6:166751000-166754200	Strong transcription	HSMM	muscle
36	chr6:166751000-166754800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
37	chr6:166751200-166752800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
38	chr6:166751400-166753200	Weak transcription	Primary hematopoietic stem cells	blood
39	chr6:166751400-166753200	Enhancers	Skeletal Muscle Male	skeletal muscle
40	chr6:166751400-166753400	Weak transcription	Brain Cingulate Gyrus	brain
41	chr6:166751400-166753400	Weak transcription	Fetal Brain Female	brain
42	chr6:166751400-166753400	Weak transcription	NHEK	skin
43	chr6:166751400-166753600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr6:166751400-166754000	Weak transcription	NHLF	lung
45	chr6:166751400-166754400	Weak transcription	Cortex derived primary cultured neurospheres	brain
46	chr6:166751400-166754800	Enhancers	Primary T helper cells PMA-I stimulated	--
47	chr6:166751400-166755000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
48	chr6:166751400-166755000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
49	chr6:166751600-166753400	Weak transcription	Brain Inferior Temporal Lobe	brain
50	chr6:166751600-166753400	Weak transcription	Brain Substantia Nigra	brain

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