Variant report

Variant	rs73031139
Chromosome Location	chr6:165562530-165562531
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 94 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:86)

rs_ID	r²[population]
rs12524368	1.00[ASN][1000 genomes]
rs12526446	1.00[ASN][1000 genomes]
rs12526464	1.00[ASN][1000 genomes]
rs12526893	1.00[ASN][1000 genomes]
rs12528187	0.95[ASN][1000 genomes]
rs12528188	0.86[ASN][1000 genomes]
rs12528338	1.00[ASN][1000 genomes]
rs12528341	0.92[ASN][1000 genomes]
rs12528577	1.00[ASN][1000 genomes]
rs12528609	1.00[ASN][1000 genomes]
rs12528642	1.00[ASN][1000 genomes]
rs12528982	1.00[ASN][1000 genomes]
rs12529577	1.00[ASN][1000 genomes]
rs12529968	1.00[ASN][1000 genomes]
rs13191911	1.00[ASN][1000 genomes]
rs13193870	1.00[ASN][1000 genomes]
rs13195893	0.84[EUR][1000 genomes]
rs13207520	1.00[ASN][1000 genomes]
rs13208025	1.00[ASN][1000 genomes]
rs13209050	1.00[ASN][1000 genomes]
rs13212901	1.00[ASN][1000 genomes]
rs13214659	1.00[ASN][1000 genomes]
rs13215765	1.00[ASN][1000 genomes]
rs13215886	1.00[ASN][1000 genomes]
rs13217976	1.00[ASN][1000 genomes]
rs13218691	1.00[ASN][1000 genomes]
rs13219248	1.00[ASN][1000 genomes]
rs13219769	1.00[ASN][1000 genomes]
rs1550554	1.00[ASN][1000 genomes]
rs1550555	1.00[ASN][1000 genomes]
rs17490804	1.00[ASN][1000 genomes]
rs17490832	1.00[ASN][1000 genomes]
rs17490859	1.00[ASN][1000 genomes]
rs17569075	1.00[ASN][1000 genomes]
rs17569276	1.00[ASN][1000 genomes]
rs34084992	1.00[ASN][1000 genomes]
rs34187571	1.00[ASN][1000 genomes]
rs34197721	1.00[ASN][1000 genomes]
rs34420965	1.00[ASN][1000 genomes]
rs34481905	1.00[ASN][1000 genomes]
rs34498225	1.00[ASN][1000 genomes]
rs34585133	0.92[ASN][1000 genomes]
rs34603531	1.00[ASN][1000 genomes]
rs34737260	1.00[ASN][1000 genomes]
rs34748873	1.00[ASN][1000 genomes]
rs34835453	1.00[ASN][1000 genomes]
rs34837466	1.00[ASN][1000 genomes]
rs35088859	1.00[ASN][1000 genomes]
rs35103038	1.00[ASN][1000 genomes]
rs35123846	1.00[ASN][1000 genomes]
rs35129463	1.00[ASN][1000 genomes]
rs35202256	1.00[ASN][1000 genomes]
rs35291133	1.00[ASN][1000 genomes]
rs35294238	0.82[ASN][1000 genomes]
rs35352885	0.82[ASN][1000 genomes]
rs35452636	1.00[ASN][1000 genomes]
rs35488052	1.00[ASN][1000 genomes]
rs35627172	1.00[ASN][1000 genomes]
rs35843011	0.82[ASN][1000 genomes]
rs36008116	1.00[ASN][1000 genomes]
rs36079103	0.96[ASN][1000 genomes]
rs36119541	1.00[ASN][1000 genomes]
rs36123713	1.00[ASN][1000 genomes]
rs55823842	1.00[ASN][1000 genomes]
rs55859887	1.00[ASN][1000 genomes]
rs56030952	1.00[ASN][1000 genomes]
rs56198342	1.00[ASN][1000 genomes]
rs56255092	1.00[ASN][1000 genomes]
rs56331142	1.00[ASN][1000 genomes]
rs56335043	1.00[ASN][1000 genomes]
rs57529423	1.00[ASN][1000 genomes]
rs60944662	1.00[ASN][1000 genomes]
rs62442100	1.00[ASN][1000 genomes]
rs62442101	1.00[ASN][1000 genomes]
rs62442102	1.00[ASN][1000 genomes]
rs62442103	1.00[ASN][1000 genomes]
rs62442104	1.00[ASN][1000 genomes]
rs62442105	1.00[ASN][1000 genomes]
rs62442108	1.00[ASN][1000 genomes]
rs62444027	1.00[ASN][1000 genomes]
rs62444053	1.00[ASN][1000 genomes]
rs66968155	1.00[ASN][1000 genomes]
rs67791096	1.00[ASN][1000 genomes]
rs73028842	1.00[ASN][1000 genomes]
rs9459304	1.00[ASN][1000 genomes]
rs9459311	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886925	chr6:165319631-165705488	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
2	nsv886927	chr6:165368163-165644276	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv432982	chr6:165528589-165835589	Active TSS Strong transcription Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
4	nsv605245	chr6:165542686-165845903	Strong transcription Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
5	nsv1031648	chr6:165544569-165841029	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
6	nsv432983	chr6:165554403-165851585	Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
7	nsv1031334	chr6:165557550-165622609	Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv3418661	chr6:165561912-165563960	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:165561400-165570400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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