Variant report

Variant	rs73031748
Chromosome Location	chr2:180210085-180210086
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:180128256..180129810-chr2:180207695..180210396,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000187231	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs73031756	1.00[AMR][1000 genomes]
rs73031757	1.00[AMR][1000 genomes]
rs7598744	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1004693	chr2:179933683-180265288	Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv834472	chr2:180091670-180220448	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv583866	chr2:180141614-180233627	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:180208800-180210200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
2	chr2:180208800-180210400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr2:180208800-180210600	Enhancers	Colon Smooth Muscle	Colon
4	chr2:180209000-180210200	Enhancers	Brain Angular Gyrus	brain
5	chr2:180209000-180210400	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr2:180209000-180210400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr2:180209000-180210400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr2:180209000-180210400	Enhancers	Osteobl	bone
9	chr2:180209000-180210600	Enhancers	Aorta	Aorta
10	chr2:180209000-180210600	Flanking Active TSS	HepG2	liver
11	chr2:180209200-180210200	Enhancers	Brain Hippocampus Middle	brain
12	chr2:180209800-180210400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
13	chr2:180209800-180210600	Enhancers	Stomach Smooth Muscle	stomach
14	chr2:180209800-180213200	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr2:180210000-180210200	Enhancers	Brain Substantia Nigra	brain
16	chr2:180210000-180213400	Weak transcription	Rectal Smooth Muscle	rectum
17	chr2:180210000-180213400	Weak transcription	NHDF-Ad	bronchial
18	chr2:180210000-180213600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr2:180210000-180213600	Weak transcription	Brain Anterior Caudate	brain
20	chr2:180210000-180213800	Weak transcription	Brain Cingulate Gyrus	brain
21	chr2:180210000-180213800	Weak transcription	Brain Inferior Temporal Lobe	brain

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