Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1516440	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1516441	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs16830872	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17241638	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17291017	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17357358	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs17357387	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs17357408	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs1914028	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1914029	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1914030	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1914038	0.81[EUR][1000 genomes]
rs4308073	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs67712818	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs73033503	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73045698	0.81[EUR][1000 genomes]
rs73050211	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73050212	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73050213	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73050229	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73052303	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73052342	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7609210	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003974	chr2:189331760-189827814	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv834490	chr2:189703550-189840963	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv875608	chr2:189753823-189837995	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv1008398	chr2:189794993-189831353	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:189794400-189802000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr2:189795000-189795200	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr2:189795000-189795600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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