Variant report

Variant	rs73033707
Chromosome Location	chr19:35844778-35844779
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:27)
CpG islands
(count:0)
Chromatin interactive
region (count:2)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:27 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	NR3C1	chr19:35844586-35844982	A549	lung:	n/a	n/a
2	JUND	chr19:35844698-35844882	K562	blood:	n/a	n/a
3	EP300	chr19:35844550-35844907	K562	blood:	n/a	n/a
4	RAD21	chr19:35844764-35844896	K562	blood:	n/a	n/a
5	CTCF	chr19:35843400-35845081	A549	lung:	n/a	chr19:35843496-35843509 chr19:35843409-35843422 chr19:35843415-35843428
6	NR3C1	chr19:35844580-35845066	A549	lung:	n/a	n/a
7	CTCF	chr19:35844700-35844850	HMEC	breast:	n/a	n/a
8	USF2	chr19:35844743-35844923	K562	blood:	n/a	n/a
9	NR3C1	chr19:35844707-35844923	A549	lung:	n/a	n/a
10	CTCF	chr19:35844740-35844890	HL-60	blood:	n/a	n/a
11	CTCF	chr19:35844633-35844994	K562	blood:	n/a	n/a
12	CTCF	chr19:35844740-35844890	A549	lung:	n/a	n/a
13	CTCF	chr19:35844760-35844910	HCPEpiC	choroid plexus:	n/a	n/a
14	CTCF	chr19:35844700-35844850	Caco-2	colon:	n/a	n/a
15	BHLHE40	chr19:35844722-35844918	K562	blood:	n/a	n/a
16	CTCF	chr19:35844740-35844890	HPF	lung:	n/a	n/a
17	CTCF	chr19:35844760-35844910	K562	blood:	n/a	n/a
18	CTCF	chr19:35844763-35844894	K562	blood:	n/a	n/a
19	CTCF	chr19:35844760-35844910	HPAF	blood vessel:	n/a	n/a
20	CTCF	chr19:35844740-35844890	HVMF	connective:	n/a	n/a
21	CEBPB	chr19:35844690-35844913	K562	blood:	n/a	n/a
22	USF1	chr19:35844722-35844910	K562	blood:	n/a	n/a
23	MYC	chr19:35844688-35844955	K562	blood:	n/a	n/a
24	CTCF	chr19:35844720-35844870	HCM	heart:	n/a	n/a
25	CTCF	chr19:35844720-35844870	HPF	lung:	n/a	n/a
26	MYC	chr19:35844679-35844947	K562	blood:	n/a	n/a
27	CTCF	chr19:35844760-35844910	GM12871	blood:	n/a	n/a

No data

(count:2 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:35842803..35847555-chr19:35958346..35962291,5	MCF-7	breast:
2	chr19:35842680..35845070-chr19:36207201..36209915,2	K562	blood:

No data

Variant related genes	Relation type
FFAR3	TF binding region
ENSG00000272333	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs12608878	0.81[ASN][1000 genomes]
rs73033710	0.88[ASN][1000 genomes]
rs73033712	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432045	chr19:35556260-36520760	Flanking Active TSS Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	191 gene(s)	inside rSNPs	diseases
2	nsv1060100	chr19:35658505-36170042	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv543993	chr19:35658505-36170042	Enhancers Strong transcription Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
4	nsv510765	chr19:35708226-35890668	Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
5	esv2758497	chr19:35711078-35887113	Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
6	esv2758758	chr19:35711078-35887113	Bivalent Enhancer Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
7	nsv833810	chr19:35782588-35971959	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	29 gene(s)	inside rSNPs	diseases
8	esv1828194	chr19:35812566-35865695	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	15 gene(s)	inside rSNPs	diseases
9	nsv1067129	chr19:35827036-35849310	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
10	nsv173	chr19:35837405-35866835	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
11	nsv2471	chr19:35837405-35903115	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
12	esv3399851	chr19:35841723-35854402	Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:35836800-35848000	Weak transcription	Brain Substantia Nigra	brain
2	chr19:35838200-35849200	Weak transcription	Brain Hippocampus Middle	brain
3	chr19:35839200-35848600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
4	chr19:35839200-35848800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr19:35840800-35846200	Active TSS	Pancreatic Islets	Pancreatic Islet
6	chr19:35840800-35848400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr19:35843600-35844800	Enhancers	Fetal Stomach	stomach
8	chr19:35843600-35845000	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr19:35843600-35845000	Enhancers	K562	blood
10	chr19:35843600-35845000	Enhancers	Monocytes-CD14+_RO01746	blood
11	chr19:35843600-35846400	Enhancers	Primary neutrophils fromperipheralblood	blood
12	chr19:35843600-35847000	Enhancers	HepG2	liver
13	chr19:35843600-35848000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr19:35843800-35846400	Weak transcription	Adipose Nuclei	Adipose
15	chr19:35843800-35848600	Weak transcription	Gastric	stomach
16	chr19:35844000-35846800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr19:35844000-35848400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
18	chr19:35844000-35848800	Weak transcription	Primary hematopoietic stem cells	blood
19	chr19:35844000-35849000	Weak transcription	Ovary	ovary
20	chr19:35844000-35849000	Weak transcription	Spleen	Spleen
21	chr19:35844200-35844800	Enhancers	Placenta	Placenta
22	chr19:35844200-35845000	Enhancers	Fetal Lung	lung
23	chr19:35844200-35846000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
24	chr19:35844200-35846200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
25	chr19:35844200-35846600	Weak transcription	Liver	Liver
26	chr19:35844200-35847200	Enhancers	GM12878-XiMat	blood
27	chr19:35844200-35848200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
28	chr19:35844200-35848400	Weak transcription	Primary T helper cells PMA-I stimulated	--
29	chr19:35844200-35848400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr19:35844200-35848400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr19:35844200-35848800	Weak transcription	Primary T helper cells fromperipheralblood	blood
32	chr19:35844200-35849000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
33	chr19:35844200-35849000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
34	chr19:35844600-35847400	Weak transcription	Primary B cells from cord blood	blood
35	chr19:35844600-35849000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood

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