Variant report

Variant	rs73034493
Chromosome Location	chr3:24493640-24493641
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:24493025..24495680-chr3:24512509..24514298,2	K562	blood:
2	chr3:24492099..24494371-chr3:24534161..24536408,2	MCF-7	breast:
3	chr3:24403805..24406463-chr3:24492311..24494276,2	MCF-7	breast:
4	chr3:24492821..24493789-chr3:24535289..24536029,2	MCF-7	breast:
5	chr3:24492726..24494917-chr3:24535454..24538001,3	MCF-7	breast:
6	chr3:24490199..24493862-chr3:24535942..24541957,6	K562	blood:
7	chr3:24491764..24494170-chr3:24500245..24501846,2	K562	blood:
8	chr3:24492504..24495428-chr3:24499515..24502431,3	MCF-7	breast:
9	chr3:24492507..24495338-chr3:24496765..24498558,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000151090	Chromatin interaction
ENSG00000272554	Chromatin interaction
ENSG00000228791	Chromatin interaction
ENSG00000224822	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11707001	0.96[EUR][1000 genomes]
rs3456	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4563353	0.80[EUR][1000 genomes]
rs62228823	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62228824	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62228825	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62228826	0.90[EUR][1000 genomes]
rs62228827	0.90[EUR][1000 genomes]
rs62228828	0.85[EUR][1000 genomes]
rs62255438	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62255439	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62255440	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62255441	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62255442	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62255443	0.83[EUR][1000 genomes]
rs73034405	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73034471	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834641	chr3:24465862-24633738	Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
2	nsv834642	chr3:24475558-24640593	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24488800-24497800	Enhancers	Fetal Intestine Small	intestine
2	chr3:24489200-24497400	Enhancers	Fetal Intestine Large	intestine
3	chr3:24490200-24494000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr3:24491000-24495200	Weak transcription	Right Ventricle	heart
5	chr3:24491000-24499400	Weak transcription	Aorta	Aorta
6	chr3:24491200-24502200	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr3:24491400-24496600	Enhancers	Rectal Mucosa Donor 31	rectum
8	chr3:24492400-24495800	Weak transcription	Rectal Smooth Muscle	rectum
9	chr3:24492400-24498600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr3:24492400-24502200	Weak transcription	Colon Smooth Muscle	Colon
11	chr3:24492800-24493800	Enhancers	A549	lung
12	chr3:24492800-24494000	Enhancers	Stomach Mucosa	stomach
13	chr3:24492800-24494200	Enhancers	Gastric	stomach
14	chr3:24493000-24494200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr3:24493000-24494200	Enhancers	Colonic Mucosa	Colon
16	chr3:24493000-24494200	Enhancers	Pancreas	Pancrea
17	chr3:24493000-24494200	Enhancers	Skeletal Muscle Female	skeletal muscle
18	chr3:24493000-24494600	Enhancers	Right Atrium	heart
19	chr3:24493000-24494600	Enhancers	Spleen	Spleen
20	chr3:24493200-24494000	Enhancers	HUES48 Cell Line	embryonic stem cell
21	chr3:24493200-24501800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr3:24493400-24493800	Flanking Active TSS	HepG2	liver
23	chr3:24493400-24494000	Enhancers	Psoas Muscle	Psoas
24	chr3:24493400-24494200	Enhancers	Sigmoid Colon	Sigmoid Colon
25	chr3:24493400-24495800	Weak transcription	Skeletal Muscle Male	skeletal muscle
26	chr3:24493600-24493800	Enhancers	Rectal Mucosa Donor 29	rectum
27	chr3:24493600-24494200	Enhancers	Duodenum Mucosa	Duodenum
28	chr3:24493600-24494200	Enhancers	Hela-S3	cervix
29	chr3:24493600-24495000	Enhancers	Liver	Liver
30	chr3:24493600-24495200	Weak transcription	Small Intestine	intestine
31	chr3:24493600-24498600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr3:24493600-24498600	Weak transcription	Adipose Nuclei	Adipose
33	chr3:24493600-24502000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr3:24493600-24504200	Weak transcription	Left Ventricle	heart

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