Variant report

Variant	rs73034501
Chromosome Location	chr2:189175122-189175123
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:189155646..189158219-chr2:189172760..189175467,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000144366	Chromatin interaction

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10221554	0.80[ASN][1000 genomes]
rs10931351	0.93[AFR][1000 genomes];0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs11676580	0.84[ASN][1000 genomes]
rs12151472	0.93[AFR][1000 genomes];0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12151502	0.93[AFR][1000 genomes];0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12151631	0.93[AFR][1000 genomes];0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs13389609	0.80[ASN][1000 genomes]
rs13403138	0.80[ASN][1000 genomes]
rs13416775	0.80[ASN][1000 genomes]
rs13432874	0.80[ASN][1000 genomes]
rs16829913	0.82[ASN][1000 genomes]
rs16829916	0.82[ASN][1000 genomes]
rs34477786	0.80[ASN][1000 genomes]
rs4371324	0.80[ASN][1000 genomes]
rs4372844	0.82[ASN][1000 genomes]
rs4453654	0.93[AFR][1000 genomes];0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs4490147	0.93[ASN][1000 genomes]
rs4536617	0.82[ASN][1000 genomes]
rs4541223	0.80[ASN][1000 genomes]
rs4552156	0.84[ASN][1000 genomes]
rs4595930	0.80[ASN][1000 genomes]
rs60577684	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs60688387	0.94[ASN][1000 genomes]
rs66579041	0.80[ASN][1000 genomes]
rs66725342	0.80[ASN][1000 genomes]
rs6707721	0.80[ASN][1000 genomes]
rs6708455	0.84[ASN][1000 genomes]
rs6714454	0.94[EUR][1000 genomes]
rs67324207	0.80[ASN][1000 genomes]
rs6735839	0.92[ASN][1000 genomes]
rs6749420	0.92[ASN][1000 genomes]
rs6749586	0.80[ASN][1000 genomes]
rs67775003	0.94[AFR][1000 genomes];0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs68056256	0.80[ASN][1000 genomes]
rs72901564	0.80[ASN][1000 genomes]
rs72901581	0.80[ASN][1000 genomes]
rs72903517	0.84[ASN][1000 genomes]
rs72903530	0.92[ASN][1000 genomes]
rs72907635	0.93[AFR][1000 genomes];0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs73034491	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73034500	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73036412	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73036455	0.94[AFR][1000 genomes];0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs73038414	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73039927	0.80[ASN][1000 genomes]
rs73039929	0.80[ASN][1000 genomes]
rs73043732	0.83[ASN][1000 genomes]
rs7422317	0.94[EUR][1000 genomes]
rs7559554	0.93[AFR][1000 genomes];0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs7562160	0.93[AFR][1000 genomes];0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs7577265	0.93[AFR][1000 genomes];0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs7586536	0.80[ASN][1000 genomes]
rs7596399	0.80[ASN][1000 genomes]
rs7601023	0.80[ASN][1000 genomes]
rs9653312	0.80[ASN][1000 genomes]
rs980065	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010394	chr2:188994398-189284092	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	10 gene(s)	inside rSNPs	diseases
2	nsv998395	chr2:189018246-189284092	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:189164600-189178200	Weak transcription	Fetal Lung	lung
2	chr2:189164600-189178600	Weak transcription	Esophagus	oesophagus
3	chr2:189168200-189183200	Weak transcription	Ovary	ovary
4	chr2:189168800-189183200	Weak transcription	A549	lung
5	chr2:189169400-189187200	Weak transcription	NHLF	lung
6	chr2:189170400-189177000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr2:189170600-189181200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr2:189170600-189183200	Weak transcription	Gastric	stomach
9	chr2:189171600-189176400	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr2:189171600-189179200	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr2:189171600-189179200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr2:189172600-189179400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr2:189172800-189182600	Weak transcription	NHDF-Ad	bronchial
14	chr2:189173000-189175800	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr2:189173400-189175200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr2:189173400-189178400	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr2:189173400-189180000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr2:189173600-189176600	Weak transcription	HUES64 Cell Line	embryonic stem cell
19	chr2:189173600-189178600	Weak transcription	HUVEC	blood vessel
20	chr2:189173800-189175800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr2:189173800-189179200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
22	chr2:189174000-189181200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr2:189174600-189178800	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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