Variant report

Variant	rs73034745
Chromosome Location	chr1:180800029-180800030
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:180760124..180761802-chr1:180799188..180801648,2	MCF-7	breast:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs57135776	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6687713	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6700142	1.00[AMR][1000 genomes]
rs73034720	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73034836	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73034840	1.00[AMR][1000 genomes]
rs73040999	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73044555	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73047756	1.00[AMR][1000 genomes]
rs73051243	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv872578	chr1:180510771-180842344	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv1014404	chr1:180770155-181090200	Weak transcription Active TSS Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	97 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:180713000-180814200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr1:180755400-180803800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
3	chr1:180755400-180820400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr1:180756800-180810200	Weak transcription	Fetal Brain Male	brain
5	chr1:180758000-180804000	Weak transcription	Duodenum Mucosa	Duodenum
6	chr1:180761400-180804600	Weak transcription	Aorta	Aorta
7	chr1:180763600-180806800	Weak transcription	Psoas Muscle	Psoas
8	chr1:180767400-180820400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr1:180768000-180812000	Weak transcription	Pancreas	Pancrea
10	chr1:180769000-180802000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
11	chr1:180771000-180813600	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr1:180772000-180823200	Weak transcription	Fetal Stomach	stomach
13	chr1:180772200-180801800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
14	chr1:180773000-180802200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr1:180773400-180849200	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr1:180773800-180853200	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr1:180774000-180806800	Weak transcription	Placenta	Placenta
18	chr1:180775000-180831600	Weak transcription	Brain Hippocampus Middle	brain
19	chr1:180776400-180801800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr1:180776600-180801800	Weak transcription	Dnd41	blood
21	chr1:180778600-180805600	Weak transcription	Brain Germinal Matrix	brain
22	chr1:180779000-180807400	Weak transcription	Right Ventricle	heart
23	chr1:180779800-180850800	Weak transcription	Small Intestine	intestine
24	chr1:180780000-180801600	Weak transcription	Brain Angular Gyrus	brain
25	chr1:180781600-180801600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr1:180781600-180805600	Weak transcription	HUES64 Cell Line	embryonic stem cell
27	chr1:180781800-180807000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
28	chr1:180781800-180810400	Weak transcription	HSMM	muscle
29	chr1:180782200-180801800	Weak transcription	Adipose Nuclei	Adipose
30	chr1:180782200-180817800	Weak transcription	Lung	lung
31	chr1:180782600-180809000	Weak transcription	Primary monocytes fromperipheralblood	blood
32	chr1:180783000-180801800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
33	chr1:180783000-180802400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
34	chr1:180783400-180802000	Weak transcription	Liver	Liver
35	chr1:180784800-180811600	Weak transcription	HSMMtube	muscle
36	chr1:180785600-180805400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
37	chr1:180785800-180804000	Weak transcription	Primary hematopoietic stem cells	blood
38	chr1:180789600-180809200	Weak transcription	Rectal Mucosa Donor 31	rectum
39	chr1:180790400-180801800	Weak transcription	Fetal Lung	lung
40	chr1:180790600-180801800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr1:180790600-180801800	Weak transcription	Fetal Brain Female	brain
42	chr1:180790800-180801800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr1:180791400-180801800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
44	chr1:180791400-180822600	Weak transcription	Fetal Heart	heart
45	chr1:180791600-180803800	Weak transcription	K562	blood
46	chr1:180793200-180810800	Weak transcription	Osteobl	bone
47	chr1:180794400-180802000	Weak transcription	Primary B cells from peripheral blood	blood
48	chr1:180795000-180801800	Weak transcription	Duodenum Smooth Muscle	Duodenum
49	chr1:180795600-180801800	Weak transcription	Primary T cells fromperipheralblood	blood
50	chr1:180795800-180802200	Weak transcription	Monocytes-CD14+_RO01746	blood

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