Variant report

Variant	rs73034848
Chromosome Location	chr3:24999806-24999807
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:24975006..24977097-chr3:24999784..25002405,2	K562	blood:
2	chr3:24999490..25001286-chr3:25005454..25007613,2	K562	blood:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10510548	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11129172	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11707375	0.87[EUR][1000 genomes]
rs11707378	0.87[EUR][1000 genomes]
rs11708922	0.86[EUR][1000 genomes]
rs11713674	0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs11716581	0.87[ASN][1000 genomes]
rs11716868	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12490596	0.81[ASN][1000 genomes]
rs12636044	0.84[EUR][1000 genomes]
rs12636070	0.83[EUR][1000 genomes]
rs12636772	0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12636778	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12637240	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs13061245	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13074839	0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs13086160	0.84[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs34006813	0.87[EUR][1000 genomes]
rs34587243	0.83[EUR][1000 genomes]
rs35120038	0.87[EUR][1000 genomes]
rs35229906	0.87[EUR][1000 genomes]
rs35302568	0.83[EUR][1000 genomes]
rs35306981	0.85[EUR][1000 genomes]
rs35332564	0.87[EUR][1000 genomes]
rs35999624	0.87[EUR][1000 genomes]
rs36025902	0.84[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs4356783	0.80[ASN][1000 genomes]
rs4458332	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4468943	0.82[EUR][1000 genomes]
rs55964723	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56369650	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6795387	0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7637426	0.82[EUR][1000 genomes]
rs7639868	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv589953	chr3:24909003-25004804	Enhancers Weak transcription Bivalent Enhancer Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv876630	chr3:24911917-25066711	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv834644	chr3:24936987-25112610	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv460482	chr3:24966768-25071616	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv589954	chr3:24966768-25071616	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv589955	chr3:24987823-25113358	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24996000-25007800	Weak transcription	Fetal Kidney	kidney
2	chr3:24998800-25000400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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