Variant report

Variant	rs73034903
Chromosome Location	chr1:174148472-174148473
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs13375690	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61019753	0.86[AFR][1000 genomes]
rs6693845	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73034906	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73034945	0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv465661	chr1:174014507-174152688	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv548193	chr1:174014507-174152688	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	nsv872552	chr1:174061844-174469748	Strong transcription Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
4	nsv1008314	chr1:174080192-174311023	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
5	nsv535207	chr1:174080192-174311023	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
6	esv1799250	chr1:174119038-174484277	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
7	esv1800060	chr1:174132703-174501836	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
8	nsv465672	chr1:174133251-174469905	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
9	nsv548194	chr1:174133251-174469905	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:174129600-174164800	Weak transcription	Gastric	stomach
2	chr1:174129600-174173200	Weak transcription	Pancreas	Pancrea
3	chr1:174129800-174149600	Weak transcription	Aorta	Aorta
4	chr1:174130000-174157600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr1:174130800-174156600	Weak transcription	Primary T cells from cord blood	blood
6	chr1:174134800-174159800	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr1:174136200-174150800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr1:174136400-174160000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr1:174137800-174155600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
10	chr1:174138400-174160000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr1:174139000-174159800	Weak transcription	Right Atrium	heart
12	chr1:174139400-174153800	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr1:174141800-174151200	Weak transcription	Fetal Heart	heart
14	chr1:174142000-174153800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
15	chr1:174144000-174151200	Weak transcription	K562	blood
16	chr1:174144000-174151400	Weak transcription	Primary B cells from peripheral blood	blood
17	chr1:174144000-174178200	Weak transcription	Left Ventricle	heart
18	chr1:174144200-174158000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
19	chr1:174145800-174150800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr1:174145800-174157600	Weak transcription	Primary T cells fromperipheralblood	blood
21	chr1:174146200-174149200	Weak transcription	Fetal Intestine Small	intestine
22	chr1:174148000-174148800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
23	chr1:174148200-174148800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
24	chr1:174148200-174149000	Genic enhancers	GM12878-XiMat	blood

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