Variant report

Variant	rs73034929
Chromosome Location	chr19:38456697-38456698
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr19:38396344..38398889-chr19:38454374..38457525,4	MCF-7	breast:
2	chr19:38455932..38458635-chr19:38458979..38461344,2	MCF-7	breast:
3	chr19:38395796..38398301-chr19:38456658..38458907,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000105738	Chromatin interaction
ENSG00000171804	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11083442	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11666497	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11667246	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11668748	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11672257	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11672673	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11672724	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1807157	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2382624	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs56672492	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59616348	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73029180	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73031215	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73034946	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949296	chr19:38034722-38763140	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:38441400-38456800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr19:38444600-38456800	Weak transcription	Colonic Mucosa	Colon
3	chr19:38445400-38457000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr19:38449800-38456800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr19:38453200-38457800	Genic enhancers	A549	lung
6	chr19:38453400-38456800	Weak transcription	Esophagus	oesophagus
7	chr19:38453400-38456800	Enhancers	HSMM	muscle
8	chr19:38454000-38458000	Weak transcription	Small Intestine	intestine
9	chr19:38454200-38456800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr19:38454200-38456800	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr19:38454200-38456800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr19:38454200-38456800	Weak transcription	Gastric	stomach
13	chr19:38454200-38456800	Weak transcription	Pancreas	Pancrea
14	chr19:38454200-38456800	Weak transcription	Spleen	Spleen
15	chr19:38454200-38456800	Weak transcription	HepG2	liver
16	chr19:38454200-38457200	Weak transcription	Lung	lung
17	chr19:38454400-38456800	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr19:38454400-38457000	Weak transcription	Stomach Mucosa	stomach
19	chr19:38454400-38460800	Weak transcription	Pancreatic Islets	Pancreatic Islet
20	chr19:38454400-38461200	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr19:38454600-38460800	Weak transcription	Monocytes-CD14+_RO01746	blood
22	chr19:38454600-38461000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
23	chr19:38454800-38457000	Weak transcription	NHDF-Ad	bronchial
24	chr19:38454800-38459200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
25	chr19:38454800-38459200	Weak transcription	NHLF	lung
26	chr19:38455000-38456800	Weak transcription	Rectal Mucosa Donor 31	rectum
27	chr19:38455000-38456800	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr19:38455000-38457000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr19:38455200-38457000	Weak transcription	Muscle Satellite Cultured Cells	--
30	chr19:38455200-38459400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr19:38455200-38461400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
32	chr19:38455400-38457000	Weak transcription	Osteobl	bone
33	chr19:38455600-38456800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr19:38455600-38457000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr19:38456000-38461000	Weak transcription	Fetal Stomach	stomach
36	chr19:38456200-38456800	Enhancers	Fetal Heart	heart
37	chr19:38456200-38459600	Enhancers	Breast Myoepithelial Primary Cells	Breast
38	chr19:38456400-38456800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr19:38456400-38457000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr19:38456400-38457000	Enhancers	NHEK	skin
41	chr19:38456400-38457200	Enhancers	iPS-18 Cell Line	embryonic stem cell
42	chr19:38456400-38457200	Enhancers	HSMMtube	muscle
43	chr19:38456400-38457400	Genic enhancers	GM12878-XiMat	blood
44	chr19:38456400-38457600	Enhancers	Cortex derived primary cultured neurospheres	brain
45	chr19:38456400-38457600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr19:38456400-38457800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
47	chr19:38456400-38457800	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr19:38456400-38457800	Enhancers	Brain Substantia Nigra	brain
49	chr19:38456400-38457800	Enhancers	Duodenum Mucosa	Duodenum
50	chr19:38456400-38457800	Enhancers	Placenta	Placenta

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