Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs59511378	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60986404	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6767771	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6781723	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6783984	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6805326	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73033601	0.83[AFR][1000 genomes]
rs73033602	0.84[AFR][1000 genomes]
rs73035614	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73035618	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73041670	0.83[EUR][1000 genomes]
rs73041672	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73041677	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73041687	0.82[EUR][1000 genomes]
rs7624451	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7625584	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7634442	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7635396	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7636112	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7638952	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7644675	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7647526	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7647691	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9681732	0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012271	chr3:179806875-180234871	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv878040	chr3:179823887-180128288	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv997388	chr3:179899279-180172349	Enhancers Active TSS ZNF genes & repeats Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv536817	chr3:179899279-180172349	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:180126000-180130000	Enhancers	HMEC	breast
2	chr3:180126200-180128200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr3:180126200-180128200	Enhancers	Osteobl	bone
4	chr3:180126200-180129200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr3:180126400-180128200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr3:180126400-180128400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr3:180126400-180128400	Enhancers	NHEK	skin
8	chr3:180126600-180127800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr3:180127000-180128000	Weak transcription	GM12878-XiMat	blood
10	chr3:180127000-180128800	Enhancers	Muscle Satellite Cultured Cells	--

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