Variant report

Variant	rs73036080
Chromosome Location	chr1:170939494-170939495
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs28363517	1.00[AMR][1000 genomes]
rs28363551	1.00[AMR][1000 genomes]
rs28363567	1.00[AMR][1000 genomes]
rs28363580	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001228	chr1:170885787-171452579	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:170937400-170939600	Weak transcription	NHDF-Ad	bronchial
2	chr1:170937400-170939800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr1:170938200-170939600	Enhancers	Fetal Heart	heart
4	chr1:170938600-170940800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr1:170938800-170940400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr1:170939000-170941000	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr1:170939400-170939600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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