Variant report

Variant	rs7303640
Chromosome Location	chr12:120840008-120840009
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:120830718..120832773-chr12:120838679..120841584,3	MCF-7	breast:
2	chr12:120815606..120818525-chr12:120838746..120840251,2	K562	blood:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1151821	1.00[EUR][1000 genomes]
rs1166789	1.00[EUR][1000 genomes]
rs1632619	1.00[EUR][1000 genomes]
rs16950118	1.00[EUR][1000 genomes]
rs59470045	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899555	chr12:120519124-120840522	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	499 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:120827200-120875200	Weak transcription	Right Atrium	heart
2	chr12:120833000-120840200	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr12:120839200-120840600	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr12:120839600-120840400	Enhancers	Fetal Heart	heart
5	chr12:120839600-120840600	Enhancers	H1 Cell Line	embryonic stem cell
6	chr12:120839600-120840600	Enhancers	Fetal Muscle Trunk	muscle
7	chr12:120839600-120841600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr12:120839800-120840200	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr12:120839800-120840200	Enhancers	Fetal Muscle Leg	muscle
10	chr12:120839800-120840400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr12:120839800-120840400	Active TSS	HUES64 Cell Line	embryonic stem cell
12	chr12:120839800-120840400	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr12:120839800-120840400	Enhancers	Fetal Lung	lung
14	chr12:120839800-120840600	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr12:120839800-120840600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr12:120839800-120840600	Enhancers	Brain Inferior Temporal Lobe	brain
17	chr12:120839800-120840600	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
18	chr12:120839800-120840600	Bivalent Enhancer	Fetal Stomach	stomach
19	chr12:120839800-120840800	Enhancers	iPS-18 Cell Line	embryonic stem cell
20	chr12:120839800-120840800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
21	chr12:120839800-120840800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr12:120840000-120840200	Active TSS	ES-I3 Cell Line	embryonic stem cell
23	chr12:120840000-120840200	Flanking Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr12:120840000-120840400	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
25	chr12:120840000-120840400	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr12:120840000-120840400	Active TSS	iPS-15b Cell Line	embryonic stem cell
27	chr12:120840000-120840400	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr12:120840000-120840400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr12:120840000-120840400	Flanking Bivalent TSS/Enh	HepG2	liver
30	chr12:120840000-120840600	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr12:120840000-120840600	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
32	chr12:120840000-120840600	Enhancers	K562	blood
33	chr12:120840000-120840800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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