Variant report

Variant	rs73036442
Chromosome Location	chr2:189187644-189187645
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:189186452..189188771-chr2:189190439..189192055,2	MCF-7	breast:
2	chr2:189186048..189188901-chr2:189195647..189197599,2	K562	blood:
3	chr2:189157973..189160899-chr2:189186398..189188411,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000144366	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs73036430	1.00[AFR][1000 genomes]
rs73036447	1.00[AFR][1000 genomes]
rs73036468	0.86[AFR][1000 genomes]
rs73038498	0.86[AFR][1000 genomes]
rs73040409	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010394	chr2:188994398-189284092	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	10 gene(s)	inside rSNPs	diseases
2	nsv998395	chr2:189018246-189284092	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
3	nsv431890	chr2:189175905-189202876	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1010330	chr2:189182307-189265614	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv584053	chr2:189184422-189245515	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv999135	chr2:189184937-189265614	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	esv275130	chr2:189185131-189188518	Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv584054	chr2:189185726-189233419	Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:189178400-189191400	Weak transcription	Fetal Lung	lung
2	chr2:189182000-189191400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr2:189182000-189192200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr2:189183000-189196000	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr2:189183400-189197200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr2:189183400-189198400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr2:189183600-189205000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr2:189183600-189205400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr2:189183800-189198600	Weak transcription	Ovary	ovary
10	chr2:189185000-189191600	Weak transcription	Placenta	Placenta
11	chr2:189185400-189189200	Enhancers	HUVEC	blood vessel
12	chr2:189186800-189188000	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr2:189186800-189188600	Flanking Active TSS	A549	lung
14	chr2:189187000-189188000	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr2:189187000-189188000	Enhancers	Stomach Mucosa	stomach
16	chr2:189187000-189188200	Enhancers	iPS-15b Cell Line	embryonic stem cell
17	chr2:189187000-189188400	Enhancers	ES-I3 Cell Line	embryonic stem cell
18	chr2:189187000-189188600	Enhancers	HUES48 Cell Line	embryonic stem cell
19	chr2:189187000-189189000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
20	chr2:189187000-189189200	Enhancers	iPS-20b Cell Line	embryonic stem cell
21	chr2:189187000-189189200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr2:189187000-189189200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr2:189187000-189189800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr2:189187000-189190000	Enhancers	NHDF-Ad	bronchial
25	chr2:189187000-189190600	Enhancers	Osteobl	bone
26	chr2:189187200-189188000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr2:189187200-189188000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr2:189187200-189188200	Enhancers	Rectal Smooth Muscle	rectum
29	chr2:189187200-189190200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr2:189187200-189190200	Enhancers	NHLF	lung
31	chr2:189187400-189187800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr2:189187400-189187800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr2:189187400-189187800	Enhancers	Aorta	Aorta
34	chr2:189187400-189187800	Enhancers	Fetal Intestine Large	intestine
35	chr2:189187400-189187800	Enhancers	Rectal Mucosa Donor 31	rectum
36	chr2:189187400-189187800	Enhancers	HSMMtube	muscle
37	chr2:189187400-189188000	Enhancers	H9 Cell Line	embryonic stem cell
38	chr2:189187400-189188000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr2:189187400-189188000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr2:189187400-189188200	Enhancers	H1 Cell Line	embryonic stem cell
41	chr2:189187400-189188200	Enhancers	K562	blood
42	chr2:189187400-189188400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr2:189187400-189188600	Enhancers	HSMM	muscle
44	chr2:189187400-189188800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
45	chr2:189187600-189187800	Enhancers	Colon Smooth Muscle	Colon
46	chr2:189187600-189187800	Enhancers	Sigmoid Colon	Sigmoid Colon
47	chr2:189187600-189187800	Flanking Active TSS	NH-A	brain
48	chr2:189187600-189188200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
49	chr2:189187600-189189200	Flanking Active TSS	Muscle Satellite Cultured Cells	--

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