Variant report

Variant	rs73037356
Chromosome Location	chr19:35871077-35871078
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:24)
CpG islands
(count:0)
Chromatin interactive
region (count:2)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:24 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CBX3	chr19:35871059-35871809	K562	blood:	n/a	n/a
2	PML	chr19:35870921-35871874	K562	blood:	n/a	n/a
3	GATA2	chr19:35871066-35872093	K562	blood:	n/a	n/a
4	FOXA1	chr19:35870885-35871787	HepG2	liver:	n/a	n/a
5	TAL1	chr19:35871010-35872081	K562	blood:	n/a	n/a
6	FOXA2	chr19:35871003-35871695	HepG2	liver:	n/a	n/a
7	CEBPB	chr19:35870419-35871781	K562	blood:	n/a	chr19:35870619-35870630
8	EP300	chr19:35871070-35871976	K562	blood:	n/a	n/a
9	TEAD4	chr19:35871010-35871883	K562	blood:	n/a	n/a
10	POLR2A	chr19:35871025-35871697	K562	blood:	n/a	n/a
11	MAFK	chr19:35871063-35872266	K562	blood:	n/a	n/a
12	HEY1	chr19:35870932-35871829	HepG2	liver:	n/a	n/a
13	MYC	chr19:35871009-35871988	K562	blood:	n/a	n/a
14	GATA1	chr19:35870900-35871948	K562	blood:	n/a	n/a
15	BHLHE40	chr19:35871044-35872001	K562	blood:	n/a	n/a
16	ZC3H11A	chr19:35870993-35871121	K562	blood:	n/a	n/a
17	RCOR1	chr19:35871014-35872254	K562	blood:	n/a	n/a
18	FOXA1	chr19:35871025-35871705	HepG2	liver:	n/a	n/a
19	TEAD4	chr19:35870966-35871963	K562	blood:	n/a	n/a
20	MAX	chr19:35870863-35872302	HepG2	liver:	n/a	n/a
21	STAT5A	chr19:35870970-35871839	K562	blood:	n/a	n/a
22	NR2F2	chr19:35871028-35871938	K562	blood:	n/a	n/a
23	CEBPD	chr19:35870949-35871815	K562	blood:	n/a	n/a
24	GATA1	chr19:35870990-35872303	PBDE	blood:	n/a	n/a

No data

(count:2 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:35866654..35868491-chr19:35868954..35871337,2	K562	blood:
2	chr19:35865310..35868154-chr19:35869837..35872073,2	K562	blood:

No data

Variant related genes	Relation type
EEF1A1P7	TF binding region

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs55659146	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55729009	1.00[ASN][1000 genomes]
rs55802006	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs55967911	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56151704	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56170770	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56178943	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56319134	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56347120	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73035323	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73035329	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73037377	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73037379	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73037394	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432045	chr19:35556260-36520760	Flanking Active TSS Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	191 gene(s)	inside rSNPs	diseases
2	nsv1060100	chr19:35658505-36170042	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv543993	chr19:35658505-36170042	Enhancers Strong transcription Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
4	nsv510765	chr19:35708226-35890668	Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
5	esv2758497	chr19:35711078-35887113	Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
6	esv2758758	chr19:35711078-35887113	Bivalent Enhancer Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
7	nsv833810	chr19:35782588-35971959	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	29 gene(s)	inside rSNPs	diseases
8	nsv2471	chr19:35837405-35903115	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
9	nsv1058164	chr19:35849061-35878368	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
10	esv1795389	chr19:35849255-35872155	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
11	nsv833811	chr19:35850257-36029535	Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
12	nsv1064784	chr19:35855341-35876310	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
13	nsv1055725	chr19:35855341-35876863	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
14	nsv911625	chr19:35856925-35890205	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
15	nsv911626	chr19:35856925-35896467	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
16	nsv911627	chr19:35856925-35921266	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
17	nsv963040	chr19:35871038-35886790	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:35869600-35874400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr19:35869800-35871800	Weak transcription	GM12878-XiMat	blood
3	chr19:35870200-35873400	Enhancers	Placenta Amnion	Placenta Amnion
4	chr19:35870400-35872600	Enhancers	Rectal Smooth Muscle	rectum
5	chr19:35870800-35872000	Enhancers	Fetal Heart	heart
6	chr19:35870800-35872200	Enhancers	Left Ventricle	heart
7	chr19:35870800-35872400	Enhancers	Stomach Mucosa	stomach
8	chr19:35871000-35871600	Flanking Active TSS	HepG2	liver
9	chr19:35871000-35871800	Enhancers	Fetal Intestine Large	intestine
10	chr19:35871000-35872000	Enhancers	Fetal Intestine Small	intestine
11	chr19:35871000-35872000	Enhancers	Pancreatic Islets	Pancreatic Islet
12	chr19:35871000-35872200	Enhancers	Gastric	stomach
13	chr19:35871000-35872200	Enhancers	Pancreas	Pancrea
14	chr19:35871000-35872200	Enhancers	Right Ventricle	heart
15	chr19:35871000-35872400	Flanking Active TSS	K562	blood
16	chr19:35871000-35872600	Enhancers	Colon Smooth Muscle	Colon

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