Variant report

Variant	rs73038257
Chromosome Location	chr1:168799087-168799088
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs57087244	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59462930	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73038218	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73038229	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73038231	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73038238	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73038254	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869415	chr1:168467284-169153863	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
2	nsv831847	chr1:168669877-168850129	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv464250	chr1:168772393-168826032	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv548145	chr1:168772393-168826032	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:168793800-168803200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr1:168794000-168801600	Weak transcription	Fetal Muscle Leg	muscle
3	chr1:168794000-168802800	Weak transcription	Gastric	stomach
4	chr1:168795600-168801600	Weak transcription	Fetal Stomach	stomach
5	chr1:168798200-168799400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr1:168798200-168802600	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr1:168798200-168802800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr1:168798800-168800200	Enhancers	Fetal Heart	heart
9	chr1:168798800-168800800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr1:168799000-168799200	Enhancers	Rectal Smooth Muscle	rectum
11	chr1:168799000-168802800	Enhancers	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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