Variant report

Variant	rs73039191
Chromosome Location	chr5:5279436-5279437
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10068364	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10512780	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16875236	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2964391	0.88[EUR][1000 genomes]
rs35333017	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs57251518	0.88[AMR][1000 genomes]
rs60073863	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6859677	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73023534	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73023579	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73039115	1.00[EUR][1000 genomes]
rs73039118	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73039119	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73039122	0.91[EUR][1000 genomes]
rs73039185	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73041114	0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73041130	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024784	chr5:4980979-5391231	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1032719	chr5:5102763-5387406	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv537621	chr5:5102763-5387406	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:5265200-5282600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr5:5271800-5291400	Weak transcription	Ovary	ovary
3	chr5:5272000-5283600	Weak transcription	Fetal Kidney	kidney
4	chr5:5272400-5298400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr5:5273200-5281000	Weak transcription	NH-A	brain
6	chr5:5273200-5283200	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr5:5273600-5283400	Weak transcription	Pancreas	Pancrea
8	chr5:5277000-5291400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr5:5278200-5279800	Enhancers	A549	lung
10	chr5:5278600-5279800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr5:5279000-5279600	Enhancers	Cortex derived primary cultured neurospheres	brain
12	chr5:5279000-5279600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr5:5279000-5279600	Enhancers	HMEC	breast
14	chr5:5279200-5279600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr5:5279200-5279600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr5:5279200-5279600	Enhancers	HUES48 Cell Line	embryonic stem cell
17	chr5:5279200-5279600	Enhancers	HUES64 Cell Line	embryonic stem cell
18	chr5:5279200-5279600	Enhancers	Breast Myoepithelial Primary Cells	Breast
19	chr5:5279200-5279600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr5:5279200-5279800	Enhancers	iPS-18 Cell Line	embryonic stem cell
21	chr5:5279400-5279600	Enhancers	iPS-20b Cell Line	embryonic stem cell
22	chr5:5279400-5288800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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