Variant report

Variant	rs73039623
Chromosome Location	chr3:24280159-24280160
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:24040157..24040686-chr3:24279663..24280184,2	K562	blood:
2	chr3:24226799..24228075-chr3:24279198..24280289,8	MCF-7	breast:
3	chr3:24227532..24228092-chr3:24279425..24280173,2	K562	blood:
4	chr3:24039886..24041425-chr3:24279180..24280348,12	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11129141	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12634582	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73039624	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7636335	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533980	chr3:23445901-24311972	ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24262200-24283200	Weak transcription	Fetal Stomach	stomach
2	chr3:24262600-24283200	Weak transcription	Left Ventricle	heart
3	chr3:24263000-24283000	Weak transcription	Brain Cingulate Gyrus	brain
4	chr3:24267000-24283000	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr3:24267000-24283800	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr3:24268200-24291000	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr3:24269400-24282400	Weak transcription	Lung	lung
8	chr3:24272400-24301400	Weak transcription	Fetal Intestine Large	intestine
9	chr3:24274400-24282800	Weak transcription	Right Ventricle	heart
10	chr3:24275200-24282600	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr3:24276000-24280600	Enhancers	HMEC	breast
12	chr3:24276600-24280800	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr3:24276600-24286200	Weak transcription	Liver	Liver
14	chr3:24276800-24283200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr3:24276800-24283800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr3:24277000-24282800	Weak transcription	Fetal Muscle Leg	muscle
17	chr3:24277000-24283400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr3:24277200-24286200	Weak transcription	HepG2	liver
19	chr3:24277400-24283400	Weak transcription	Pancreas	Pancrea
20	chr3:24277600-24282400	Weak transcription	Fetal Intestine Small	intestine
21	chr3:24277800-24281600	Weak transcription	Psoas Muscle	Psoas
22	chr3:24278600-24280600	Enhancers	Muscle Satellite Cultured Cells	--
23	chr3:24278600-24280800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr3:24278600-24280800	Enhancers	HSMMtube	muscle
25	chr3:24278600-24282400	Enhancers	NHDF-Ad	bronchial
26	chr3:24278800-24280200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr3:24278800-24280400	Enhancers	NHEK	skin
28	chr3:24279000-24280200	Enhancers	Brain Angular Gyrus	brain
29	chr3:24279000-24280200	Enhancers	Stomach Mucosa	stomach
30	chr3:24279000-24280200	Enhancers	A549	lung
31	chr3:24279000-24280200	Enhancers	HUVEC	blood vessel
32	chr3:24279000-24280200	Enhancers	Osteobl	bone
33	chr3:24279000-24280400	Enhancers	NH-A	brain
34	chr3:24279000-24280600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr3:24279000-24280800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr3:24279000-24280800	Enhancers	Colon Smooth Muscle	Colon
37	chr3:24279000-24280800	Enhancers	Rectal Smooth Muscle	rectum
38	chr3:24279000-24281000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr3:24279000-24281000	Enhancers	Rectal Mucosa Donor 31	rectum
40	chr3:24279000-24281000	Enhancers	Hela-S3	cervix
41	chr3:24279000-24281800	Enhancers	Skeletal Muscle Male	skeletal muscle
42	chr3:24279200-24280400	Enhancers	Duodenum Smooth Muscle	Duodenum
43	chr3:24279200-24280600	Enhancers	Adipose Nuclei	Adipose
44	chr3:24279200-24280800	Enhancers	Stomach Smooth Muscle	stomach
45	chr3:24279400-24280200	Enhancers	Fetal Lung	lung
46	chr3:24279400-24280400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr3:24279400-24283800	Weak transcription	Placenta Amnion	Placenta Amnion
48	chr3:24279600-24281000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr3:24279600-24281600	Weak transcription	Skeletal Muscle Female	skeletal muscle
50	chr3:24279600-24283000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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