Variant report
Variant | rs73039697 |
---|---|
Chromosome Location | chr2:189031832-189031833 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10168173 | 1.00[EUR][1000 genomes] |
rs10497688 | 1.00[EUR][1000 genomes] |
rs13393870 | 1.00[EUR][1000 genomes] |
rs13394334 | 1.00[EUR][1000 genomes] |
rs13430185 | 1.00[EUR][1000 genomes] |
rs13430412 | 1.00[EUR][1000 genomes] |
rs16829488 | 1.00[EUR][1000 genomes] |
rs16829836 | 1.00[EUR][1000 genomes] |
rs16829866 | 1.00[EUR][1000 genomes] |
rs16829915 | 1.00[EUR][1000 genomes] |
rs16829922 | 1.00[EUR][1000 genomes] |
rs56787383 | 1.00[EUR][1000 genomes] |
rs58765845 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs59058494 | 1.00[EUR][1000 genomes] |
rs59329932 | 1.00[EUR][1000 genomes] |
rs60483729 | 1.00[EUR][1000 genomes] |
rs61163899 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs6705443 | 1.00[EUR][1000 genomes] |
rs6709650 | 1.00[EUR][1000 genomes] |
rs6716922 | 1.00[EUR][1000 genomes] |
rs6721812 | 1.00[EUR][1000 genomes] |
rs6757707 | 1.00[EUR][1000 genomes] |
rs73036471 | 1.00[EUR][1000 genomes] |
rs73036479 | 1.00[EUR][1000 genomes] |
rs73036496 | 1.00[EUR][1000 genomes] |
rs73037640 | 1.00[EUR][1000 genomes] |
rs73037651 | 1.00[EUR][1000 genomes] |
rs73039667 | 1.00[EUR][1000 genomes] |
rs73039680 | 1.00[EUR][1000 genomes] |
rs73039700 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs73041610 | 1.00[EUR][1000 genomes] |
rs73041636 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs73041644 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs73041648 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs73041649 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs7577096 | 1.00[EUR][1000 genomes] |
rs7586703 | 1.00[EUR][1000 genomes] |
rs7592433 | 1.00[EUR][1000 genomes] |
rs7592539 | 1.00[EUR][1000 genomes] |
rs7596417 | 1.00[EUR][1000 genomes] |
rs7597930 | 1.00[EUR][1000 genomes] |
rs7598380 | 1.00[EUR][1000 genomes] |
rs7599101 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs9653310 | 1.00[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv875604 | chr2:188957640-189043137 | Enhancers Transcr. at gene 5' and 3' Strong transcription Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer | Chromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
2 | nsv1010394 | chr2:188994398-189284092 | Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 10 gene(s) | inside rSNPs | diseases |
3 | nsv875605 | chr2:189017499-189080087 | Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
4 | nsv998395 | chr2:189018246-189284092 | Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 8 gene(s) | inside rSNPs | diseases |
5 | nsv521460 | chr2:189025977-189046900 | Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr2:189029400-189032400 | ZNF genes & repeats | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
2 | chr2:189030600-189039200 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
3 | chr2:189030800-189032000 | Weak transcription | ES-I3 Cell Line | embryonic stem cell |
4 | chr2:189031200-189032000 | Weak transcription | HUES6 Cell Line | embryonic stem cell |