Variant report

Variant	rs73039983
Chromosome Location	chr2:189119508-189119509
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10194523	1.00[AMR][1000 genomes]
rs59957505	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73032381	0.97[AFR][1000 genomes]
rs73036433	0.91[AFR][1000 genomes]
rs73036454	0.91[AFR][1000 genomes]
rs73039991	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010394	chr2:188994398-189284092	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	10 gene(s)	inside rSNPs	diseases
2	nsv998395	chr2:189018246-189284092	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
3	nsv511165	chr2:189112811-189122229	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv3457161	chr2:189117807-189122905	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv3522728	chr2:189118457-189122255	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv3457165	chr2:189118732-189122080	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv3522731	chr2:189118957-189122155	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv3457164	chr2:189119183-189121490	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv3460678	chr2:189119206-189120992	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
10	esv3460679	chr2:189119223-189120987	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv511829	chr2:189119345-189121787	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
12	esv6145	chr2:189119409-189121146	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
13	esv3457162	chr2:189119495-189121073	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:189100400-189121200	Weak transcription	K562	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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