Variant report

Variant	rs73040441
Chromosome Location	chr2:189285010-189285011
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11678294	0.88[AFR][1000 genomes]
rs11683340	0.88[AFR][1000 genomes]
rs58715158	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58718952	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59329932	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73036471	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73036479	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73036496	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73040411	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73040428	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73040439	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73040442	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73040450	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73040454	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7592433	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7592539	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7598380	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534341	chr2:189200405-189368467	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv533786	chr2:189248503-189354495	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv584055	chr2:189266823-189493686	Enhancers Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:189251000-189285200	Weak transcription	Aorta	Aorta
2	chr2:189270600-189285200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr2:189270600-189285200	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr2:189271000-189285200	Weak transcription	Fetal Lung	lung
5	chr2:189276200-189285200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr2:189276400-189289800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr2:189276600-189290800	Weak transcription	Placenta	Placenta
8	chr2:189277000-189289400	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr2:189277000-189289600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr2:189277200-189285200	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr2:189277600-189285200	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr2:189280200-189285200	Weak transcription	Fetal Intestine Large	intestine
13	chr2:189283400-189285800	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr2:189283400-189285800	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
15	chr2:189283400-189292200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr2:189283800-189285200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr2:189283800-189285600	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr2:189284000-189285800	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr2:189285000-189285600	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links