Variant report

Variant	rs73040542
Chromosome Location	chr19:40522564-40522565
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11880843	0.85[EUR][1000 genomes]
rs11881551	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11883342	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs55838062	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73040535	0.92[EUR][1000 genomes]
rs73040537	0.92[EUR][1000 genomes]
rs73040556	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73040573	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917321	chr19:40403192-40694875	Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:40504000-40533800	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr19:40512000-40527200	ZNF genes & repeats	Liver	Liver
3	chr19:40514000-40523000	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr19:40517400-40522800	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr19:40521200-40540800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr19:40522200-40524400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr19:40522200-40524400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr19:40522400-40524400	Weak transcription	Aorta	Aorta
9	chr19:40522400-40524400	Weak transcription	Dnd41	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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