Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10784018	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10784021	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs10877374	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs10877379	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs10877382	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs10877384	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs2364149	1.00[MEX][hapmap]
rs2364701	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs2364702	0.91[AFR][1000 genomes]
rs4269958	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs4468382	1.00[MEX][hapmap]
rs4519124	0.88[AFR][1000 genomes]
rs4519125	0.96[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs6581289	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs6581291	0.89[AFR][1000 genomes]
rs6581292	0.96[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7299084	0.96[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7301616	1.00[MEX][hapmap]
rs8181702	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs965427	0.92[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869425	chr12:59746898-60479741	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv516042	chr12:60354307-60459370	Flanking Active TSS Enhancers Strong transcription Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv899136	chr12:60373244-60483607	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv559103	chr12:60383069-60483607	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	esv3404761	chr12:60410885-60415483	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:60408800-60420600	Weak transcription	Fetal Intestine Small	intestine
2	chr12:60414200-60418400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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